View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15873_high_14 (Length: 342)

Name: NF15873_high_14
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15873_high_14
NF15873_high_14
[»] chr7 (1 HSPs)
chr7 (16-326)||(41876042-41876352)
[»] chr8 (1 HSPs)
chr8 (56-326)||(40867714-40867984)
[»] chr1 (2 HSPs)
chr1 (55-326)||(24817495-24817771)
chr1 (55-326)||(24800419-24800695)


Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 326
Target Start/End: Original strand, 41876042 - 41876352
Alignment:
Q  16 aatatgttatagggaactgtgacttgcttttgctaagcattgctctttgacatgtttagttgatcttgcagtggccaaggtaccatatccttggagcttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41876042 aatatgttatagggaactgtgacttgcttttgctaagcattgctctttgacatgtttagttgatcttgcagtggccaaggtaccatatccttggagcttt 41876141  T
Q  116 tggaacaagcccctcagattgatactcttgtagtacctataagtggtttgttcttatttttatgttaatccatcaaccaaatgttttaaaattttcataa 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41876142 tggaacaagcccctcagattgatactcttgtagtacctataagtggtttgttctcatttttatgttaatccatcaaccaaatgttttaaaattttcataa 41876241  T
Q  216 attttagtattctcatctcgattttccaacaaaatgaaaattgtaggcagtggtatggcatcgggagtagcattagctgccaaggccattaacccgtcta 315  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41876242 attttagtattctcttctcgattttccaacaaaatgaaaattgtaggcggtggtatggcatcgggagtagcattagctgccaaggccattaacccgtcta 41876341  T
Q  316 ttcggattttg 326  Q
    |||||||||||    
T  41876342 ttcggattttg 41876352  T

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Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 56 - 326
Target Start/End: Complemental strand, 40867984 - 40867714
Alignment:
Q  56 tgctctttgacatgtttagttgatcttgcagtggccaaggtaccatatccttggagcttttggaacaagcccctcagattgatactcttgtagtacctat 155  Q
    |||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||  | ||||| ||||| ||||| ||    
T  40867984 tgctctttgacatgtttgtttgatcttgcagtggccagggtaccatatccttggagcttctggaacaagcccctcaactagatacacttgtggtaccaat 40867885  T
Q  156 aagtggtttgttcttatttttatgttaatccatcaacc-aaatgttttaaaattttcataaattttagtattctcatctcgattttccaacaaaatgaaa 254  Q
    ||||||||||||    |||| |||| || |||||| || |||||||| ||||||| |||  ||||| |||| | | ||| ||||||||||| ||||||||    
T  40867884 aagtggtttgtttgctttttgatgtcaaaccatcatccaaaatgtttcaaaatttgcattgattttggtatccccttcttgattttccaac-aaatgaaa 40867786  T
Q  255 attgtaggcagtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttg 326  Q
    | || |||  ||||| ||  ||| ||||||||||| ||||||||| | || |||||| | ||||| ||||||    
T  40867785 actgcaggaggtggtttgatatcaggagtagcattggctgccaagtctatcaacccggccattcgtattttg 40867714  T

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Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 55 - 326
Target Start/End: Complemental strand, 24817771 - 24817495
Alignment:
Q  55 ttgctctttgacatgttta---gttgatcttgcagtggccaaggtaccatatccttggagcttttggaacaagcccctcagattgatactcttgtagtac 151  Q
    ||||||||||||||||||    |||||||||  ||||||||||||||||||||||||||| || | ||||||  |||||| || ||||| ||||||||||    
T  24817771 ttgctctttgacatgtttgctggttgatcttatagtggccaaggtaccatatccttggagtttcttgaacaaatccctcaaatcgatacacttgtagtac 24817672  T
Q  152 ctataagtggtttgt--tcttatttttatgttaatccatcaaccaaatgttttaaaattttcataaattttagtattctcatctcgattttccaacaaaa 249  Q
    | |||||||||||||  |||  |||||| || ||||||||| | |||||||| | ||||| |||| | |||||||| ||| | ||||||||   ||||||    
T  24817671 caataagtggtttgttctctcttttttacgtcaatccatcatcaaaatgtttcacaatttgcatataatttagtatcctcttatcgattttgttacaaaa 24817572  T
Q  250 tgaaaattgtaggcagtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttg 326  Q
    ||| | ||| |||| | ||||||  | | ||| ||||| ||||||||||||| ||||| ||| ||||||| ||||||    
T  24817571 tgatacttgcaggcggcggtatgatagcaggaatagcaatagctgccaaggcgattaatccggctattcgtattttg 24817495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 55 - 326
Target Start/End: Complemental strand, 24800695 - 24800419
Alignment:
Q  55 ttgctctttgacatgttta---gttgatcttgcagtggccaaggtaccatatccttggagcttttggaacaagcccctcagattgatactcttgtagtac 151  Q
    ||||||||||||||||||    |||||||||  ||||||||||||||||||||||||||| || | ||||||  |||||| || ||||| ||||||||||    
T  24800695 ttgctctttgacatgtttgctggttgatcttatagtggccaaggtaccatatccttggagtttcttgaacaaatccctcaaatcgatacacttgtagtac 24800596  T
Q  152 ctataagtggtttgt--tcttatttttatgttaatccatcaaccaaatgttttaaaattttcataaattttagtattctcatctcgattttccaacaaaa 249  Q
    | |||||||||||||  |||  |||||| || ||||||||| | |||||||| | ||||| |||| | |||||||| ||| | ||||||||   ||||||    
T  24800595 caataagtggtttgttctctcttttttacgtcaatccatcatcaaaatgtttcacaatttgcatataatttagtatcctcttatcgattttgttacaaaa 24800496  T
Q  250 tgaaaattgtaggcagtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttg 326  Q
    ||| | ||| |||  | ||||||  | | ||| ||||| ||||||||||||| ||||| ||| ||||||| ||||||    
T  24800495 tgatacttgcaggtggcggtatgatagcaggaatagcaatagctgccaaggcgattaatccggctattcgtattttg 24800419  T

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