View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15873_high_15 (Length: 341)
Name: NF15873_high_15
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15873_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 322
Target Start/End: Complemental strand, 28289018 - 28288707
Alignment:
| Q |
9 |
gattatactagaatgagggaacttttcttgagaagaatgatgcctttgaggcatgtgattatgacacctccttaattttaagtttggctttggaaaataa |
108 |
Q |
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| T |
28289018 |
gattatactagaatgagggaacttttcttgagaagaatggtgcctttgaggcatgtgattatgaca---ccttaatttt-agtttggctttggaaaataa |
28288923 |
T |
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| Q |
109 |
tgattccctgagactagcacaaattatatcccctttattcttcagacatcctctacgcagcaagaaattgctacattc------ttgaagacaacaattt |
202 |
Q |
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| T |
28288922 |
tgatt-cctgagactagcacaaactatatcccctttattcttcagacat-ctctacgcagtaagaaattgctacattctgtgaattgaagacaacaattt |
28288825 |
T |
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| Q |
203 |
ttaacaccaagttcataactctatcagttacaaattagcctatggactgggttggataaatatcaaaacttgaagatactcacgttaaacaaggatactt |
302 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28288824 |
ttaacaccaagttcataactc--tcagttacaaattagcctatggactgggttggataaatatcaaaacttgaagatactcatgttaaacaaggatactt |
28288727 |
T |
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| Q |
303 |
gaactggtggagcttttgta |
322 |
Q |
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|||||||||||||||||||| |
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| T |
28288726 |
gaactggtggagcttttgta |
28288707 |
T |
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