View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15873_high_16 (Length: 327)
Name: NF15873_high_16
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15873_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 91 - 311
Target Start/End: Complemental strand, 30286279 - 30286059
Alignment:
| Q |
91 |
cacacatatttgagatatatttttagaataaacttattaaataaactaaatactcatttgcaaacattaactaattttctctttaaaggataaacttaca |
190 |
Q |
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| T |
30286279 |
cacacatatttgagatatatttttagaataaacttattaaataaactaaatactcatttgcaaacattaactaattttctctttaaaggataaacttaca |
30286180 |
T |
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| Q |
191 |
aaaccatacaaattgtaggtattaaaattaataaataaaccatcaatatagtctttgaagtatcaacctctcaacaatttagtccataaaacatataaaa |
290 |
Q |
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| T |
30286179 |
aaaccatacaaattgtaggtattaaaattaataaataaaccatcaatatagtctttgaagtatcaacctctcaacaatttagtccataaaccatataaaa |
30286080 |
T |
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| Q |
291 |
atgcttcaatttagtctctaa |
311 |
Q |
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| T |
30286079 |
atgcttcaatttagtctctaa |
30286059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 30286369 - 30286326
Alignment:
| Q |
1 |
ccataatcctagaagagaaactatagtatccataataaccgtgg |
44 |
Q |
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| T |
30286369 |
ccataatcctagaagagaaactatagtatccataataaccgtgg |
30286326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 38227260 - 38227320
Alignment:
| Q |
230 |
ccatcaatatagtctttgaagtatcaacctctcaacaatttagtccataaaacatataaaa |
290 |
Q |
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| T |
38227260 |
ccatcagtttagtccttgaactatcaacctctcaccaatttagtccctaaactatataaaa |
38227320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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