View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15873_high_17 (Length: 299)
Name: NF15873_high_17
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15873_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 21 - 288
Target Start/End: Complemental strand, 9192266 - 9192000
Alignment:
| Q |
21 |
gtggtgaggtgagtctctgccttttcaactgtcaaaacccatttggctctaattgggacgttatagagggtcggatcctgaaattttaatttgtggaaaa |
120 |
Q |
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| T |
9192266 |
gtggtgaggtgagtctctgccttttcaactgtcaaaacccatttggctctaattgggacgttatagagggtcggaccctgaaattttaatttgtggaaaa |
9192167 |
T |
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| Q |
121 |
aatatcattatcaacaattttctttatatcattagaaagtcacacgtataaacggtggaatcagtatatgaactacaatttcgatatttttatcggttga |
220 |
Q |
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| T |
9192166 |
aatatcattataaacaattttctttatatcattagaaagtcacacgtataaacggt-gaatcagtgtatgaactacaatttcaatatttttatcggttga |
9192068 |
T |
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| Q |
221 |
gttaagatttatagacggttaatatatttctttaagcagatcaaataattagttaacaattcatctct |
288 |
Q |
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| T |
9192067 |
gttaagatttatagacggttaatatatttctttaagcagatcaaataattagttaacaattcatctct |
9192000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 35868297 - 35868260
Alignment:
| Q |
195 |
acaatttcgatatttttatcggttgagttaagatttat |
232 |
Q |
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| T |
35868297 |
acaatttcgatatttttatcggttgagttaagacttat |
35868260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 230
Target Start/End: Complemental strand, 41843949 - 41843914
Alignment:
| Q |
195 |
acaatttcgatatttttatcggttgagttaagattt |
230 |
Q |
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| T |
41843949 |
acaatttcaatatttttatcggttgagttaagattt |
41843914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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