View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15873_high_20 (Length: 291)
Name: NF15873_high_20
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15873_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 19990975 - 19990872
Alignment:
| Q |
1 |
attgcataagatcggtgcagttaaagttaattcatcccttccctttcaacctcgttgagtttcgtggcaatggcacacacacctttgcctaataactcca |
100 |
Q |
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| T |
19990975 |
attgcataacatcggtgcagttaaagttaattcatcccttccctttcaacct-gttgagtttcgtggcaatggcacacacacatttgcctaataactcca |
19990877 |
T |
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| Q |
101 |
ttgat |
105 |
Q |
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||||| |
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| T |
19990876 |
ttgat |
19990872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 197 - 276
Target Start/End: Complemental strand, 19990776 - 19990697
Alignment:
| Q |
197 |
atattcattctttttaggttttattttgatccattcatgtatcgatgcaactgcaccatttatcactgtcatgtagtggt |
276 |
Q |
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| T |
19990776 |
atattcattctttttaggttttattttgatccattcatgtattgatgcaactccaccatttatcactgtcatgtagtggt |
19990697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 16072895 - 16072937
Alignment:
| Q |
196 |
gatattcattctttttaggttttattttgatccattcatgtat |
238 |
Q |
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| T |
16072895 |
gatattcattctttttaggttttattttgatccattcatgtat |
16072937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 48208293 - 48208188
Alignment:
| Q |
1 |
attgcataagatcggtgcagttaaagttaattcatcccttccctttcaacctcgttgagtttcgtggcaatggcacacacacctttgcctaataactcca |
100 |
Q |
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| T |
48208293 |
attgcataacatcggtgcgtttaaagttaattcatcccttccctttcaacctcgttgagtttcacggcaatggcacacacacttttgcctaataactcca |
48208194 |
T |
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| Q |
101 |
ttgata |
106 |
Q |
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|
|||||| |
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| T |
48208193 |
ttgata |
48208188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 193 - 271
Target Start/End: Complemental strand, 48208101 - 48208023
Alignment:
| Q |
193 |
ggagatattcattctttttaggttttattttgatccattcatgtatcgatgcaactgcaccatttatcactgtcatgta |
271 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48208101 |
ggagatattcattctttttagattttattttgatccattcatgtattgatgcaactgcaccatttatcactgtcatgta |
48208023 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 673827 - 673872
Alignment:
| Q |
40 |
tccctttcaacctcgttgagtttcgtggcaatggcacacacacctt |
85 |
Q |
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|||||||||||||| ||| ||||||||||||| |||||||||||| |
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| T |
673827 |
tccctttcaacctctttgcatttcgtggcaatgccacacacacctt |
673872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 276
Target Start/End: Original strand, 673987 - 674060
Alignment:
| Q |
199 |
attcattctttttaggttttattttgatccattcatgtatcgatgcaactgcaccatttatcactgtcatgtagtggt |
276 |
Q |
| |
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|||||||||||| |||||||||||||||| ||||||| |||| || |||||| || | | ||||||||||||||| |
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| T |
673987 |
attcattcttttcaggttttattttgatc----catgtattgatgaaattgcaccgttcaacgctgtcatgtagtggt |
674060 |
T |
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