View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15873_high_25 (Length: 271)
Name: NF15873_high_25
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15873_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 32844851 - 32844607
Alignment:
| Q |
9 |
gagatgaacgagggaacctgaggtcgtgcgttgcaaggcccaagtgtggaaaaggccagcaaaacaatacttgcaaacatacacgacgctgaaagccaca |
108 |
Q |
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| T |
32844851 |
gagacgaacgagggaacctgaggtcgtgcgttgcaaggcccaagtgtggaaaaagccagcaaaacaatacttgcaaacatacacaacgctgaaagccaca |
32844752 |
T |
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| Q |
109 |
aagcataagatgaggacggtgagggtgaaggctactagagccggtggggtcttgtatgttggggccggtggggtgtcgtacttaggctccgatgaagaca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844751 |
aagcataagatgaggacggtgagggtgaaggctactagagccggtggggtcttgtatgttggggccggtggggtgtcgtacttaggctccgatgaagaca |
32844652 |
T |
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| Q |
209 |
ttggcgggatgagaaactatcaacaatggaatattattggttttc |
253 |
Q |
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| T |
32844651 |
ttggcgggatgagaaactatcaacaatggaatattattggttttc |
32844607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 27745171 - 27744927
Alignment:
| Q |
9 |
gagatgaacgagggaacctgaggtcgtgcgttgcaaggcccaagtgtggaaaaggccagcaaaacaatacttgcaaacatacacgacgctgaaagccaca |
108 |
Q |
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|||| |||||||||| ||||||| |||||| ||||||||||| | ||||||| ||| ||||| ||||||||||||| |||||| | ||||||||||||| |
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| T |
27745171 |
gagacgaacgagggatcctgaggccgtgcgatgcaaggcccacatatggaaaatgcctgcaaagcaatacttgcaaagatacacaatgctgaaagccaca |
27745072 |
T |
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| Q |
109 |
aagcataagatgaggacggtgagggtgaaggctactagagccggtggggtcttgtatgttggggccggtggggtgtcgtacttaggctccgatgaagaca |
208 |
Q |
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| T |
27745071 |
aagcataggatgaggacggtgagggtgaaggctactagtgccggtggggtcttatgtgctggagccggtggggggtcgtacttagattctgataaagaca |
27744972 |
T |
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| Q |
209 |
ttggcgggatgagaaactatcaacaatggaatattattggttttc |
253 |
Q |
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||| || ||||||||||||||||||||| | |||||||||||| |
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| T |
27744971 |
ttgtcgaattgagaaactatcaacaatggactgttattggttttc |
27744927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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