View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15873_high_29 (Length: 252)
Name: NF15873_high_29
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15873_high_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 40900262 - 40900486
Alignment:
| Q |
12 |
aagaagtttggggtgaatgagtttgtaaacccgaaagatcataacaaacctgttcaacaagttagttcattgacaatttagtatatagtagtttattata |
111 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40900262 |
aagaagtttggggtaaatgagtttgtaaacccgaaagatcataacaaacctgttcaacaagttagttcattgacaatttagtatatagtagtttattata |
40900361 |
T |
|
| Q |
112 |
tttctgttttcaattttgaattttaaagcacgattctatgaattataatgttgttggtgtgcaggtaattgctgaaatgacaaatggaggtgtggatcgt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40900362 |
tttctgttttcaattttgaattttaaagcatgattctatgaattataatgttgttggtgtgcaggtaattgctgaaatgacaaatggaggtgtggatcgt |
40900461 |
T |
|
| Q |
212 |
gctgttgaatgtaccgggagcatcc |
236 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
40900462 |
gctgttgaatgtaccgggagcatcc |
40900486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 40904797 - 40904866
Alignment:
| Q |
12 |
aagaagtttggggtgaatgagtttgtaaacccgaaagatcataacaaacctgttcaacaagttagttcat |
81 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40904797 |
aagaagtttggggtgaatgagtttgtaaaccctaaagatcatgacaaacctgttcaacaagttagttcat |
40904866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 40904964 - 40905035
Alignment:
| Q |
165 |
ttggtgtgcaggtaattgctgaaatgacaaatggaggtgtggatcgtgctgttgaatgtaccgggagcatcc |
236 |
Q |
| |
|
||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40904964 |
ttggtttgcaggtaattgctgaaatgaccaacggaggtgtggatcgtgctgttgaatgtaccgggagcatcc |
40905035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 40881727 - 40881787
Alignment:
| Q |
174 |
aggtaattgctgaaatgacaaatggaggtgtggatcgtgctgttgaatgtaccgggagcat |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
40881727 |
aggtaattgctgaaatgacaaatggaggtgtagatcgtgctgttgaatgtaccggtagcat |
40881787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 40881570 - 40881638
Alignment:
| Q |
12 |
aagaagtttggggtgaatgagtttgtaaacccgaaagatcataacaaacctgttcaacaagttagttca |
80 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||||||| |||||||||| ||||| ||||||||| |
|
|
| T |
40881570 |
aagaagtttggggtaaatgagtttgtgaacccaaaagatcatgacaaacctgtacaacaggttagttca |
40881638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University