View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15873_high_33 (Length: 234)
Name: NF15873_high_33
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15873_high_33 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 9170473 - 9170698
Alignment:
| Q |
1 |
taattgatgtgtttgcatatactcgggatctaagtatccaagtgttccttgcaccattgttgctatctctgtttgatcaagtggaaccaatcttgaagct |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9170473 |
taatttatgtgtttgcatatactcgggatctaagtatccaagtgttccttgcaccattgttgctatctctgtttgatcaagtggaaccaatcttgaagct |
9170572 |
T |
|
| Q |
101 |
ccgaagtcggaaactttggcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaattgatgcagatgaatgcagat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9170573 |
ccgaagtcggaaactttggcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaattgatgcagatgaatgtagat |
9170672 |
T |
|
| Q |
201 |
acgataaagctccagctgtctctgct |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
9170673 |
acgataaagctccagctgtctctgct |
9170698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 9218556 - 9218781
Alignment:
| Q |
1 |
taattgatgtgtttgcatatactcgggatctaagtatccaagtgttccttgcaccattgttgctatctctgtttgatcaagtggaaccaatcttgaagct |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||||||| |
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|
| T |
9218556 |
taattgatgtgtttgcatatactctggatctaagtatccaagagttccttgtaccattgtcgctatctcggtttgatcaagtggaaccaatcttgaagct |
9218655 |
T |
|
| Q |
101 |
ccgaagtcggaaactttggcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaattgatgcagatgaatgcagat |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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|
| T |
9218656 |
ccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaattgatgcagctgaatgtagat |
9218755 |
T |
|
| Q |
201 |
acgataaagctccagctgtctctgct |
226 |
Q |
| |
|
| |||||||| ||||||||||||||| |
|
|
| T |
9218756 |
atgataaagcaccagctgtctctgct |
9218781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 9200043 - 9200261
Alignment:
| Q |
4 |
ttgatgtgtttgcatatactcgggatctaagtatccaagtgttccttgcaccattgttgctatctctgtttgatcaagtggaaccaatcttgaagctccg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
9200043 |
ttgatgtgtttgcatatactcgggatctaagtatccaagtgttccttgcaccattgttgctatctctgtttgatcaagtggaaccaatctggaagctcca |
9200142 |
T |
|
| Q |
104 |
aagtcggaaactttggcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaattgatgcagatgaatgcagatacg |
203 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||| | |
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|
| T |
9200143 |
aagtcagaaacttttgcggtgtaattgtcatccaagagaatgttggtactcttaacatctctgtggataattggaattgatgcagctgaatgtagatatg |
9200242 |
T |
|
| Q |
204 |
ataaagctccagctgtctc |
222 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
9200243 |
ataaagctccagctgtctc |
9200261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 9118805 - 9118580
Alignment:
| Q |
1 |
taattgatgtgtttgcatatactcgggatctaagtatccaagtgttccttgcaccattgttgctatctctgtttgatcaagtggaaccaatcttgaagct |
100 |
Q |
| |
|
||||||||| |||||||| ||||| || ||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| | |||||| |
|
|
| T |
9118805 |
taattgatgcgtttgcatgtactctgggtctaagtatccaagtgttccttgtaccactgttgctatctcggtttgatcaagtggaaccaatttggaagct |
9118706 |
T |
|
| Q |
101 |
ccgaagtcggaaactttggcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaattgatgcagatgaatgcagat |
200 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
9118705 |
ccgaaatcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaaatgatgcagatgaatgtagat |
9118606 |
T |
|
| Q |
201 |
acgataaagctccagctgtctctgct |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
9118605 |
acgataaagctccagctgtctctgct |
9118580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 9161650 - 9161872
Alignment:
| Q |
4 |
ttgatgtgtttgcatatactcgggatctaagtatccaagtgttccttgcaccattgttgctatctctgtttgatcaagtggaaccaatcttgaagctccg |
103 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
9161650 |
ttgatgtgtttgcatatactccggatctaagtaaccaagagttccttgtaccattgttgctatctcggtttgatcaagtggaaccaacctcgaagctcca |
9161749 |
T |
|
| Q |
104 |
aagtcggaaactttggcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaattgatgcagatgaatgcagatacg |
203 |
Q |
| |
|
|| || |||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | ||||| |
|
|
| T |
9161750 |
aaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtactcttaacatctctatggataataggtattgatgcagatgaatgtaaatacg |
9161849 |
T |
|
| Q |
204 |
ataaagctccagctgtctctgct |
226 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
9161850 |
ataaagctccggctgtctctgct |
9161872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 9155735 - 9155960
Alignment:
| Q |
1 |
taattgatgtgtttgcatatactcgggatctaagtatccaagtgttccttgcaccattgttgctatctctgtttgatcaagtggaaccaatcttgaagct |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| || || |||||| |
|
|
| T |
9155735 |
taattgatgagtttgcatatactctggatctaggtatccaagagttccttgaaccattgttgctatctcggtttgatcaagtggaactaacctcgaagct |
9155834 |
T |
|
| Q |
101 |
ccgaagtcggaaactttggcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaattgatgcagatgaatgcagat |
200 |
Q |
| |
|
|| || ||||||||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||||| || ||||||||||||||||| |||| |
|
|
| T |
9155835 |
ccaaaatcggaaactttcgctgtgtaattgtcatccaagagaatgttggtacttttgacatctctatggataatcggtattgatgcagatgaatgtagat |
9155934 |
T |
|
| Q |
201 |
acgataaagctccagctgtctctgct |
226 |
Q |
| |
|
||||||||||||| |||||||||||| |
|
|
| T |
9155935 |
acgataaagctccggctgtctctgct |
9155960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 9229448 - 9229653
Alignment:
| Q |
8 |
tgtgtttgcatatactcgggatctaagtatccaagtgttccttgcaccattgttgctatctctgtttgatcaagtggaaccaatcttgaagctccgaagt |
107 |
Q |
| |
|
|||||||||||||| || |||||||| || ||||| |||||||| |||| || |||||| || |||||||||||||||||||||||||| || || | |
|
|
| T |
9229448 |
tgtgtttgcatatattctggatctaaatagccaagagttccttgtaccacagtggctatcatagtatgatcaagtggaaccaatcttgaagcaccaaaat |
9229547 |
T |
|
| Q |
108 |
cggaaactttggcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaattgatgcagatgaatgcagatacgataa |
207 |
Q |
| |
|
| || ||||| ||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||| | |||||||||||||| ||||| ||||| |
|
|
| T |
9229548 |
cagacacttttgcagtgtaattgtcatccaagagaatgttggcacttttgacatctctatggataattggtaaggatgcagatgaatgtagatatgataa |
9229647 |
T |
|
| Q |
208 |
agctcc |
213 |
Q |
| |
|
|||||| |
|
|
| T |
9229648 |
agctcc |
9229653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 1868817 - 1868601
Alignment:
| Q |
1 |
taattgatgtgtttgcatatactcgggatctaagtatccaagtgttccttgcaccattgttgctatctctgtttgatcaagtggaaccaatcttgaagct |
100 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||| |||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
1868817 |
taattgacttgtttgcatatactctggatctaagtagccaatagttccttgcaccattgtggctatttcagtttgatcaagtggaaccaatcttgaagct |
1868718 |
T |
|
| Q |
101 |
ccgaagtcggaaactttggcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaattgatgcagatgaatgcagat |
200 |
Q |
| |
|
|| || || || |||||||| |||| | ||| ||||||||||| |||||| |||||||||||||| || || ||||| ||| ||||||| |||| |
|
|
| T |
1868717 |
ccaaaatccgatactttggcggtgttggttctatctaagagaatgttatcactcttgacatctctatggatgatgggtattgaggcatatgaatgtagat |
1868618 |
T |
|
| Q |
201 |
acgataaagctccagct |
217 |
Q |
| |
|
| || |||||| ||||| |
|
|
| T |
1868617 |
atgacaaagcttcagct |
1868601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 1843208 - 1843008
Alignment:
| Q |
1 |
taattgatgtgtttgcatatactcgggatctaagtatccaagtgttccttgcaccattgttgctatctctgtttgatcaagtggaaccaatcttgaagct |
100 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||| |||| ||||||||||||||||| ||||| || |||||||||| ||||||||||||||||||| |
|
|
| T |
1843208 |
taattgacttgtttgcatatactctggatctaagtagccaatagttccttgcaccattgtggctatttcagtttgatcaattggaaccaatcttgaagct |
1843109 |
T |
|
| Q |
101 |
ccgaagtcggaaactttggcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaattgatgcagatgaatgcagat |
200 |
Q |
| |
|
|| || || || |||||||| |||| | ||| ||||||||||| |||||| |||||||||||||| ||||| ||||| ||| ||||||| |||| |
|
|
| T |
1843108 |
ccaaaatctgatactttggctgtgttggttctatctaagagaatgttatcactcttgacatctctatggattattggtattgaggcatatgaatgtagat |
1843009 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
|
| |
|
|
| T |
1843008 |
a |
1843008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 1857219 - 1857019
Alignment:
| Q |
1 |
taattgatgtgtttgcatatactcgggatctaagtatccaagtgttccttgcaccattgttgctatctctgtttgatcaagtggaaccaatcttgaagct |
100 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||| |||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
1857219 |
taattgacttgtttgcatatactctggatctaagtagccaatagttccttgcaccattgtggctatttcagtttgatcaagtggaaccaatcttgaagct |
1857120 |
T |
|
| Q |
101 |
ccgaagtcggaaactttggcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaattgatgcagatgaatgcagat |
200 |
Q |
| |
|
|| || || || |||||||| |||| | |||| ||||||||||| |||||| |||||||||||||| || || |||| ||| ||||||| |||| |
|
|
| T |
1857119 |
ccaaaatccgacactttggcggtgttggttccatctaagagaatgttatcactcttgacatctctatggatgatgggtgttgaggcatatgaatgtagat |
1857020 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
|
| |
|
|
| T |
1857019 |
a |
1857019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 1815834 - 1816041
Alignment:
| Q |
10 |
tgtttgcatatactcgggatctaagtatccaagtgttccttgcaccattgttgctatctctgtttgatcaagtggaaccaatcttgaagctccgaagtcg |
109 |
Q |
| |
|
||||||||||||||| ||||| ||||| |||| ||||||||||||||||| |||| || |||||||||||||||| ||| ||||| ||||| || || |
|
|
| T |
1815834 |
tgtttgcatatactctggatccaagtagccaatagttccttgcaccattgtggctacttcagtttgatcaagtggaatcaaccttgatgctccaaaatct |
1815933 |
T |
|
| Q |
110 |
gaaactttggcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaattgatgcagatgaatgcagatacgataaag |
209 |
Q |
| |
|
|| ||||| || |||| | |||| ||||||||||| | |||||| ||||||||||||||||| || ||||| |||| |||||||||||| || | || |
|
|
| T |
1815934 |
gacactttagcggtgttggttccatctaagagaatgttagcactcttgacatctctatggataatgggtattgaggcagctgaatgcagatatgacagag |
1816033 |
T |
|
| Q |
210 |
ctccagct |
217 |
Q |
| |
|
|||||||| |
|
|
| T |
1816034 |
ctccagct |
1816041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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