View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15873_high_36 (Length: 202)
Name: NF15873_high_36
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15873_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 23222243 - 23222415
Alignment:
| Q |
13 |
aagaatatattctcagcctctcaggagtagttgtggagcactctctatgtacgttggttttttgctaaccatatcaatggttgagcaccctctacattga |
112 |
Q |
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| T |
23222243 |
aagaatatattctcagcctctcaggagtagttgtggagcactctctatgtacgttggttttttgctaaccagatcaatggttgagcaccctctacattga |
23222342 |
T |
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| Q |
113 |
ttcgtggaaatgcatctactttgaaattaaatcaacaagttgcttatgagagttgaatcatttatcttaaata |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23222343 |
ttcgtggaaatgcatctactttgaaattaaatcaacaagttgcttatgagagttgaatcatttatcttaaata |
23222415 |
T |
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