View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15873_high_5 (Length: 567)

Name: NF15873_high_5
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15873_high_5
NF15873_high_5
[»] chr1 (12 HSPs)
chr1 (318-550)||(1598798-1599030)
chr1 (82-237)||(1599080-1599233)
chr1 (166-237)||(8352184-8352255)
chr1 (22-64)||(1599250-1599292)
chr1 (173-235)||(12321477-12321539)
chr1 (174-234)||(50692138-50692198)
chr1 (189-232)||(27559971-27560014)
chr1 (175-236)||(4604888-4604949)
chr1 (197-234)||(21945110-21945147)
chr1 (174-235)||(46673867-46673928)
chr1 (177-230)||(48377825-48377878)
chr1 (192-236)||(36141720-36141764)
[»] scaffold0018 (1 HSPs)
scaffold0018 (173-236)||(135826-135889)
[»] chr4 (9 HSPs)
chr4 (167-225)||(27952528-27952586)
chr4 (158-219)||(52760255-52760316)
chr4 (177-234)||(53658420-53658477)
chr4 (174-222)||(47493229-47493277)
chr4 (166-232)||(46518474-46518540)
chr4 (174-235)||(32125389-32125450)
chr4 (177-234)||(40025983-40026040)
chr4 (172-232)||(20114117-20114177)
chr4 (166-210)||(52673618-52673662)
[»] chr6 (5 HSPs)
chr6 (184-235)||(16433951-16434002)
chr6 (177-232)||(32650127-32650182)
chr6 (197-235)||(9605418-9605456)
chr6 (175-220)||(5483931-5483976)
chr6 (197-234)||(27159122-27159159)
[»] chr5 (7 HSPs)
chr5 (177-232)||(8235435-8235490)
chr5 (177-231)||(12676144-12676198)
chr5 (198-232)||(30778052-30778086)
chr5 (175-212)||(34445335-34445372)
chr5 (172-232)||(5002198-5002258)
chr5 (196-236)||(8047691-8047731)
chr5 (158-210)||(26221036-26221088)
[»] chr7 (4 HSPs)
chr7 (158-236)||(4132437-4132515)
chr7 (156-212)||(39854730-39854786)
chr7 (177-215)||(37624335-37624373)
chr7 (174-232)||(40362028-40362086)
[»] chr3 (4 HSPs)
chr3 (173-234)||(27697318-27697379)
chr3 (175-230)||(9502901-9502956)
chr3 (189-232)||(29290836-29290879)
chr3 (166-235)||(49733642-49733713)
[»] chr8 (5 HSPs)
chr8 (173-235)||(30857280-30857342)
chr8 (197-234)||(4578239-4578276)
chr8 (172-236)||(7693063-7693127)
chr8 (172-232)||(10396822-10396882)
chr8 (198-234)||(43447896-43447932)
[»] chr2 (3 HSPs)
chr2 (198-232)||(40532837-40532871)
chr2 (167-236)||(6458589-6458658)
chr2 (175-236)||(28248966-28249027)
[»] scaffold0020 (1 HSPs)
scaffold0020 (175-231)||(133673-133729)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 318 - 550
Target Start/End: Complemental strand, 1599030 - 1598798
Alignment:
Q  318 gactaatttagaagatggggaatatgctttctcttttttatcatgcaattattatctcaaattctctttcaatttgatccttccccgggaaaagaaattg 417  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1599030 gactaatttagaagatggggaatatactttctcttttttatcatgcaattgttatctcaaattctctttcaatttgatccttccccgggaaaagaaattg 1598931  T
Q  418 ctcattatggaaactttcacatgctatattgaggcaattaggaccaccatcatcttatggtggatgctacgcacgtggctacatgagcatatattgatat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1598930 ctcattatggaaactttcacatgctatattgaggcaattaggaccaccatcatcttatggtggatgctacgcacgtgactacatgagcatatattgatat 1598831  T
Q  518 aggtgtgtcttgtgattgctataatctctatat 550  Q
    |||||||||||||||||||||||||||||||||    
T  1598830 aggtgtgtcttgtgattgctataatctctatat 1598798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 82 - 237
Target Start/End: Complemental strand, 1599233 - 1599080
Alignment:
Q  82 tccattgacatcgtaaaatacatagcataaaatgaggggggaaagttggctaaaaaacatatatatatcagatacaattacaaacaaaactttacttttt 181  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||  ||||||||||||||||||| |||||||| |||| |||||||    
T  1599233 tccattgacatcataaaatacatagcataaaatgagggggaaaagttgtctaaaaaa--tatatatatcagatacaataacaaacaacacttcacttttt 1599136  T
Q  182 agattttttgaataactaatgtatttagtctataatatatatcaaatacattaatc 237  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  1599135 agattttttaaataactaatgtatttagtctataatatatatcagatacattaatc 1599080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 166 - 237
Target Start/End: Complemental strand, 8352255 - 8352184
Alignment:
Q  166 caaaactttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacattaatc 237  Q
    ||||||||  |||||||||| | |||||||| ||||||||||| ||||||||| |||| | |||||||||||    
T  8352255 caaaacttccctttttagatatattgaataattaatgtatttattctataataaatattagatacattaatc 8352184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 1599292 - 1599250
Alignment:
Q  22 gtgggatagctttgtggtttaatatattccattttaatttctt 64  Q
    |||||||| |||||||||||||||||||||||||| |||||||    
T  1599292 gtgggataactttgtggtttaatatattccattttgatttctt 1599250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 12321477 - 12321539
Alignment:
Q  173 ttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacattaa 235  Q
    ||||||||||| ||| || || | ||||||||||| |||||||||||||||||| ||||||||    
T  12321477 ttactttttaggtttattaaaaatctaatgtatttggtctataatatatatcaactacattaa 12321539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 50692198 - 50692138
Alignment:
Q  174 tactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacatta 234  Q
    ||||||||||||| || |||||  ||||||||||  ||||||||||||| |||||||||||    
T  50692198 tactttttagattcttagaatacgtaatgtatttgatctataatatataccaaatacatta 50692138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 27559971 - 27560014
Alignment:
Q  189 ttgaataactaatgtatttagtctataatatatatcaaatacat 232  Q
    ||||||| ||||||||||| || |||||||||||||||||||||    
T  27559971 ttgaatatctaatgtatttggtttataatatatatcaaatacat 27560014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 4604949 - 4604888
Alignment:
Q  175 actttttagattttttgaataactaatgtatttagtctataatatatatcaaatacattaat 236  Q
    ||||||||| ||| ||||||| ||||||||||| || |||| |||| | |||||||||||||    
T  4604949 actttttaggtttattgaatacctaatgtatttggtatatattataaaccaaatacattaat 4604888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 21945147 - 21945110
Alignment:
Q  197 ctaatgtatttagtctataatatatatcaaatacatta 234  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  21945147 ctaatgtatttggtctataatatataccaaatacatta 21945110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 46673867 - 46673928
Alignment:
Q  174 tactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacattaa 235  Q
    |||||||||||||  ||||||| ||||| ||||| ||||| | |||| ||||||||||||||    
T  46673867 tactttttagattcattgaatatctaatatatttggtctagattatagatcaaatacattaa 46673928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 48377825 - 48377878
Alignment:
Q  177 tttttagattttttgaataactaatgtatttagtctataatatatatcaaatac 230  Q
    |||| |||||| |||||||| | |||||||||||||||| |||| |||||||||    
T  48377825 ttttcagatttattgaataattgatgtatttagtctatattataaatcaaatac 48377878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 36141720 - 36141764
Alignment:
Q  192 aataactaatgtatttagtctataatatatatcaaatacattaat 236  Q
    |||||||||||||||| |||| || |||| |||||||||||||||    
T  36141720 aataactaatgtatttggtctttattatagatcaaatacattaat 36141764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 135889 - 135826
Alignment:
Q  173 ttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacattaat 236  Q
    |||||||||||| |  |||| ||||| ||||||||||||||||||||| |||||||||||||||    
T  135889 ttactttttagactcattgattaacttatgtatttagtctataatataaatcaaatacattaat 135826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 27952586 - 27952528
Alignment:
Q  167 aaaactttactttttagattttttgaataactaatgtatttagtctataatatatatca 225  Q
    |||| |||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||    
T  27952586 aaaattttaatttttagatttgttgaataactattgtatttggtctataatatatatca 27952528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 52760255 - 52760316
Alignment:
Q  158 attacaaacaaaactttactttttagattttttgaataactaatgtatttagtctataatat 219  Q
    |||| |||||||| || ||||||||||||| |||||||||  ||||||||||| ||||||||    
T  52760255 attataaacaaaatttaactttttagatttattgaataacacatgtatttagtatataatat 52760316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 53658477 - 53658420
Alignment:
Q  177 tttttagattttttgaataactaatgtatttagtctataatatatatcaaatacatta 234  Q
    ||||||||||| ||| ||||||||||||||| ||||| |||||| | |||||||||||    
T  53658477 tttttagatttattgtataactaatgtattttgtctagaatatagaccaaatacatta 53658420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 47493229 - 47493277
Alignment:
Q  174 tactttttagattttttgaataactaatgtatttagtctataatatata 222  Q
    |||||||||||||| ||||||| ||||||||||| |||||||| |||||    
T  47493229 tactttttagatttattgaatacctaatgtatttggtctataacatata 47493277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 46518540 - 46518474
Alignment:
Q  166 caaaactttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacat 232  Q
    ||||| || ||||||||| ||| || ||||| | |||||||||||| |||||||||| |||||||||    
T  46518540 caaaaattaactttttaggtttattcaataaatgatgtatttagtcaataatatataccaaatacat 46518474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 32125450 - 32125389
Alignment:
Q  174 tactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacattaa 235  Q
    |||||||||| ||  ||||||| ||||||||| | |||||||||||||| ||| ||||||||    
T  32125450 tactttttaggttcattgaatatctaatgtatgtggtctataatatataccaagtacattaa 32125389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 40025983 - 40026040
Alignment:
Q  177 tttttagattttttgaataactaatgtatttagtctataatatatatcaaatacatta 234  Q
    ||||||||||||||||||||||||| ||||  || | ||||||| |||||||| ||||    
T  40025983 tttttagattttttgaataactaatatattcggtttgtaatataaatcaaatatatta 40026040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 20114177 - 20114117
Alignment:
Q  172 tttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacat 232  Q
    |||||||||||||||  ||||||||||||||||| | ||||||| | || | |||||||||    
T  20114177 tttactttttagattaattgaataactaatgtatatggtctatattctaaaccaaatacat 20114117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 52673618 - 52673662
Alignment:
Q  166 caaaactttactttttagattttttgaataactaatgtatttagt 210  Q
    |||||||||||||||||||| | |||||||| |||||||| ||||    
T  52673618 caaaactttactttttagatatattgaataattaatgtatctagt 52673662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 16434002 - 16433951
Alignment:
Q  184 attttttgaataactaatgtatttagtctataatatatatcaaatacattaa 235  Q
    |||| ||||||| |||||||||||  ||||||||||||||||||||||||||    
T  16434002 atttattgaatatctaatgtatttgatctataatatatatcaaatacattaa 16433951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 32650127 - 32650182
Alignment:
Q  177 tttttagattttttgaataactaatgtatttagtctataatatatatcaaatacat 232  Q
    ||||||||||| ||||||| ||||| ||||||||||||| |||||| |||||||||    
T  32650127 tttttagatttattgaatacctaatatatttagtctatattatataccaaatacat 32650182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 9605456 - 9605418
Alignment:
Q  197 ctaatgtatttagtctataatatatatcaaatacattaa 235  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  9605456 ctaatgtatttggtctataatatatatcaaatacattaa 9605418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 5483976 - 5483931
Alignment:
Q  175 actttttagattttttgaataactaatgtatttagtctataatata 220  Q
    ||||||||||||  |||||||| |||||||||||||||| ||||||    
T  5483976 actttttagattcgttgaataattaatgtatttagtctaaaatata 5483931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 27159159 - 27159122
Alignment:
Q  197 ctaatgtatttagtctataatatatatcaaatacatta 234  Q
    |||||||||||  |||||||||||||||||||||||||    
T  27159159 ctaatgtatttgatctataatatatatcaaatacatta 27159122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 8235490 - 8235435
Alignment:
Q  177 tttttagattttttgaataactaatgtatttagtctataatatatatcaaatacat 232  Q
    ||||||||||| |||||||| |||| ||||| |||||||||||| |||||||||||    
T  8235490 tttttagatttattgaataattaatatatttggtctataatataaatcaaatacat 8235435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 12676144 - 12676198
Alignment:
Q  177 tttttagattttttgaataactaatgtatttagtctataatatatatcaaataca 231  Q
    ||||||||||  |||||||||||||||||||  ||| ||||||| ||||||||||    
T  12676144 tttttagattcattgaataactaatgtatttgatctgtaatataaatcaaataca 12676198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 232
Target Start/End: Original strand, 30778052 - 30778086
Alignment:
Q  198 taatgtatttagtctataatatatatcaaatacat 232  Q
    |||||||||||||||||||||||||||| ||||||    
T  30778052 taatgtatttagtctataatatatatcacatacat 30778086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 34445372 - 34445335
Alignment:
Q  175 actttttagattttttgaataactaatgtatttagtct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  34445372 actttttagatttattgaataactaatgtatttggtct 34445335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 5002258 - 5002198
Alignment:
Q  172 tttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacat 232  Q
    |||||||||||||||| |||| ||| | |||||| | ||||| |||||| |||||||||||    
T  5002258 tttactttttagatttattgagtaattgatgtatcttgtctaaaatatagatcaaatacat 5002198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 8047731 - 8047691
Alignment:
Q  196 actaatgtatttagtctataatatatatcaaatacattaat 236  Q
    |||||||||| || |||||||||||||||| ||||||||||    
T  8047731 actaatgtatctaatctataatatatatcagatacattaat 8047691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 26221036 - 26221088
Alignment:
Q  158 attacaaacaaaactttactttttagattttttgaataactaatgtatttagt 210  Q
    |||| |||||||||||||||||||||||   |||||||| |||||||| ||||    
T  26221036 attataaacaaaactttactttttagatacattgaataattaatgtatctagt 26221088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 4132515 - 4132437
Alignment:
Q  158 attacaaacaaaactttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacattaat 236  Q
    |||| ||||||||||| |||||||||||   |||||||  ||||||||||||||||||||| |||  | ||||||||||    
T  4132515 attataaacaaaacttaactttttagatacattgaatatttaatgtatttagtctataataaatactatatacattaat 4132437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 39854730 - 39854786
Alignment:
Q  156 caattacaaacaaaactttactttttagattttttgaataactaatgtatttagtct 212  Q
    |||||| ||| |||| |||| ||||||||||| || |||||||||||||||||||||    
T  39854730 caattataaataaaattttagtttttagatttatttaataactaatgtatttagtct 39854786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 37624373 - 37624335
Alignment:
Q  177 tttttagattttttgaataactaatgtatttagtctata 215  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  37624373 tttttagattctttgaataactaatgtatttagtttata 37624335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 40362086 - 40362028
Alignment:
Q  174 tactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacat 232  Q
    |||||||||| ||| |||||| | |||||||||| ||||| |||||| |||||||||||    
T  40362086 tactttttaggtttattgaatgattaatgtatttggtctacaatataaatcaaatacat 40362028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 27697379 - 27697318
Alignment:
Q  173 ttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacatta 234  Q
    ||||||||||| ||  ||||||| |||| ||||||||| |||||| ||||||||||||||||    
T  27697379 ttactttttaggttggttgaatacctaacgtatttagtttataatctatatcaaatacatta 27697318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 9502901 - 9502956
Alignment:
Q  175 actttttagattttttgaataactaatgtatttagtctataatatatatcaaatac 230  Q
    ||||||||||||  || || | ||||||||||| ||||||||||||||||||||||    
T  9502901 actttttagattcattcaacacctaatgtatttggtctataatatatatcaaatac 9502956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 29290879 - 29290836
Alignment:
Q  189 ttgaataactaatgtatttagtctataatatatatcaaatacat 232  Q
    |||||||||| ||||||||||||||||||||| |||| ||||||    
T  29290879 ttgaataacttatgtatttagtctataatatagatcagatacat 29290836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 49733642 - 49733713
Alignment:
Q  166 caaaactttactttttagattttttgaataactaatgtatttagtctataatatatat--caaatacattaa 235  Q
    |||||| | ||||||||||||| |||||||  ||||||||| ||  ||||||||||||  ||||||||||||    
T  49733642 caaaacataactttttagatttattgaatacttaatgtattgagcatataatatatataccaaatacattaa 49733713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 30857342 - 30857280
Alignment:
Q  173 ttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacattaa 235  Q
    ||||||||||||||| ||||||  ||||| |||||  | ||||||||||| ||||||||||||    
T  30857342 ttactttttagatttattgaatgcctaatatatttgatgtataatatataccaaatacattaa 30857280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 4578239 - 4578276
Alignment:
Q  197 ctaatgtatttagtctataatatatatcaaatacatta 234  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  4578239 ctaatgtatttggtctataatatatatgaaatacatta 4578276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 7693063 - 7693127
Alignment:
Q  172 tttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacattaat 236  Q
    |||||||||| ||||  ||| |||| | |||||||||||||||| | |||| |||||||||||||    
T  7693063 tttacttttttgattcattgcataaatgatgtatttagtctatattttataccaaatacattaat 7693127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 10396822 - 10396882
Alignment:
Q  172 tttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacat 232  Q
    |||||||||||||||  ||||||||||||||||| | ||||||| | || | |||||||||    
T  10396822 tttactttttagattaattgaataactaatgtatatggtctatattctaaaccaaatacat 10396882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 43447896 - 43447932
Alignment:
Q  198 taatgtatttagtctataatatatatcaaatacatta 234  Q
    |||| |||||||||||||||||||||||| |||||||    
T  43447896 taatttatttagtctataatatatatcaagtacatta 43447932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 232
Target Start/End: Original strand, 40532837 - 40532871
Alignment:
Q  198 taatgtatttagtctataatatatatcaaatacat 232  Q
    |||||||||| ||||||||||||||||||||||||    
T  40532837 taatgtatttggtctataatatatatcaaatacat 40532871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 6458658 - 6458589
Alignment:
Q  167 aaaactttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacattaat 236  Q
    |||| |||| ||||||||||| |||| ||| |  |||||||  ||||||||||| |||||||||||||||    
T  6458658 aaaaatttaatttttagatttattgattaatttttgtatttgatctataatatagatcaaatacattaat 6458589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 28248966 - 28249027
Alignment:
Q  175 actttttagattttttgaataactaatgtatttagtctataatatatatcaaatacattaat 236  Q
    ||||||| ||||  ||| |||| |||||||||||||||||| | |||| |||||||||||||    
T  28248966 acttttttgattaattgcataaataatgtatttagtctatattctataccaaatacattaat 28249027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 133673 - 133729
Alignment:
Q  175 actttttagattttttgaataactaatgtatttagtctataatatatatcaaataca 231  Q
    ||||||||||||  |||| |||||||||||| | |||||||||| |||||| |||||    
T  133673 actttttagattgattgagtaactaatgtatctggtctataatacatatcagataca 133729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University