View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15873_high_9 (Length: 455)
Name: NF15873_high_9
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15873_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 33357122 - 33357350
Alignment:
| Q |
16 |
caatatataacattcacaattcacaaagtaaactaaattaaaacacacacatgattgatatagataggnnnnnnnnttaactttgaaaccaatattttag |
115 |
Q |
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| T |
33357122 |
caatatataacattcacaattcacaaagtaaactaaattaaaacacacacatgattgatatagataggaaaaaaaataaactttgaaaccaatattttag |
33357221 |
T |
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| Q |
116 |
aagaaataatcatgatagaaacacactaccatgagagtaagaaactgagtctaaaaagaacnnnnnnncacatgaattgcttgttttcctctccaaatgg |
215 |
Q |
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| T |
33357222 |
aagaaataatcatgatagaaacacactaccatgagagtaagaaactgattctaaaaagaacaaaaaaacccatgaattgcttgttttcctctccaaatgg |
33357321 |
T |
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| Q |
216 |
tggaggcctaaaaaacaacaacacaggaa |
244 |
Q |
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| T |
33357322 |
tggaggcctaaaaaacaacaacacaggaa |
33357350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 357 - 449
Target Start/End: Original strand, 33358052 - 33358143
Alignment:
| Q |
357 |
ttcaaatgaaactagttcccactcaagaacgagttttctaactatagttatagacgttttaagttgacttatttccaatcattttcatctcac |
449 |
Q |
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| T |
33358052 |
ttcaaatgaaactagttcc-actcaataacgagttttctaactatagttatagacgttttaagttgacttatttccaatcattttcatatcac |
33358143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 243 - 345
Target Start/End: Original strand, 33357374 - 33357486
Alignment:
| Q |
243 |
aagttaggaagttgtgatgttacgttaaactttgagacatattagttgtgttcacggagcc----------gatacatggtaagactatgaaatctaata |
332 |
Q |
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| T |
33357374 |
aagtaaggaagttgtgatgttacgttaaactttgtgtcatattagttgtgttcacggagccgatacatgtagatacatggtaagactatgaaatctaata |
33357473 |
T |
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| Q |
333 |
tggagaaactatt |
345 |
Q |
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| T |
33357474 |
tggagaaactatt |
33357486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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