View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15873_low_1 (Length: 840)
Name: NF15873_low_1
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15873_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 488; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 14 - 533
Target Start/End: Original strand, 43586408 - 43586927
Alignment:
| Q |
14 |
cacaatccactgcagaagctgaattcatagcagcaacagctgctgcaaatcaagttttatggttaaaaaaggttttatgtgatttagatatctagcagaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
43586408 |
cacaatccactgcagaagctgaattcatagcagcaacagctgctgcaaatcaagttttatggttaaaaaaggttttatgtgatttagatatccaacagaa |
43586507 |
T |
|
| Q |
114 |
tgataagacaaaaatctttgtcgacagtcaggcagcaattgcaatttcaaaggatccagtatgtcatgggaagactaaacatttcaacatcaagctctac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43586508 |
tgataagacaaaaatctttgtcgacagtcaggcagcaattgcaatttcaaaggatccagtatgtcatgggaagactaaacatttcaacatcaagctctac |
43586607 |
T |
|
| Q |
214 |
ttcttaagagaggttcaacaaagtggagaagtcactttggtttattgcagatcagaagagcaactggcagatttatttacaaaaccacttcctgttggca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43586608 |
ttcttaagagaggttcaacaaagtggagaagtcactttggtttattgcagatcagaagagcaactggcagatttatttacaaaaccacttcctgttagca |
43586707 |
T |
|
| Q |
314 |
agtttcagttcttaaggcagaaaattggagtttgcagatcctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggcttttcttt |
413 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43586708 |
agtttgagttcttaaggcagaaaattggagtttgcagatcctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggcttttcttt |
43586807 |
T |
|
| Q |
414 |
atgtttattttattctgtatcatttattttcagtcaattagtgttcatacattttaggagcaagtagttgttacttgctgatgtattggcaacgtgtgtt |
513 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43586808 |
atgtttattttattctgtatcagttatttttagtcaattagtgttcctacattttaggagcaagtagttgttacttgctgaagtattggcaacgtgtgtt |
43586907 |
T |
|
| Q |
514 |
gttcagttttgttttttaaa |
533 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
43586908 |
gttcagttttgttttttaaa |
43586927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 14 - 529
Target Start/End: Complemental strand, 35966371 - 35965856
Alignment:
| Q |
14 |
cacaatccactgcagaagctgaattcatagcagcaacagctgctgcaaatcaagttttatggttaaaaaaggttttatgtgatttagatatctagcagaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
35966371 |
cacaatccactgcagaagctgaattcatagcagcaacagctgctgcaaatcaagttttatggttaaaaaaggttttatgtgatttagatatccaacagaa |
35966272 |
T |
|
| Q |
114 |
tgataagacaaaaatctttgtcgacagtcaggcagcaattgcaatttcaaaggatccagtatgtcatgggaagactaaacatttcaacatcaagctctac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35966271 |
tgataagacaaaaatctttgtcgacagtcaggcagcaattgcaatttcaaaggatccagtatgtcatgggaagactaaacatttcaacattaagctctac |
35966172 |
T |
|
| Q |
214 |
ttcttaagagaggttcaacaaagtggagaagtcactttggtttattgcagatcagaagagcaactggcagatttatttacaaaaccacttcctgttggca |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
35966171 |
ttcttaagagaggttcaacaaagtggagaagtcactttgctttattgcagatcagaagagcaactggcagatttatttacaaaaccacttcctgttagca |
35966072 |
T |
|
| Q |
314 |
agtttcagttcttaaggcagaaaattggagtttgcagatcctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggcttttcttt |
413 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
35966071 |
agtttgagttcttaaggcagaaaattggagtttgcagatcctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggcttttgttt |
35965972 |
T |
|
| Q |
414 |
atgtttattttattctgtatcatttattttcagtcaattagtgttcatacattttaggagcaagtagttgttacttgctgatgtattggcaacgtgtgtt |
513 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35965971 |
atgtttattttattctctatcagttatttttagtcaattagtgttcctacattttaggagcaagtagttgttacttgctgaagtattggcaacgtgtgtt |
35965872 |
T |
|
| Q |
514 |
gttcagttttgttttt |
529 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
35965871 |
gttcagttttgttttt |
35965856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 368 - 533
Target Start/End: Original strand, 43582545 - 43582710
Alignment:
| Q |
368 |
agtgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtatcatttattttcagtcaattagtgttcatacattt |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||| |
|
|
| T |
43582545 |
agtgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtatcagttatttttagtcaattagtgttcctacattt |
43582644 |
T |
|
| Q |
468 |
taggagcaagtagttgttacttgctgatgtattggcaacgtgtgttgttcagttttgttttttaaa |
533 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43582645 |
taggagcaagtagttgttacttgctgaagtattggcaacgtgtgttgttcagttttgttttttaaa |
43582710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 35987783 - 35987627
Alignment:
| Q |
14 |
cacaatccactgcagaagctgaattcatagcagcaacagctgctgcaaatcaagttttatggttaaaaaaggttttatgtgatttagatatctagcagaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
35987783 |
cacaatccactgcagaagctgaattcatagcagcaacagctgctgcaaatcaagttttatggttaaaaaaggttttatgtgatttagatatccaacagaa |
35987684 |
T |
|
| Q |
114 |
tgataagacaaaaatctttgtcgacagtcaggcagcaattgcaatttcaaaggatcc |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35987683 |
tgataagacaaaaatctttgtcgacagtcaggcagcaattgcaatttcaaaggatcc |
35987627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 370 - 533
Target Start/End: Original strand, 8985666 - 8985829
Alignment:
| Q |
370 |
tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtatcatttattttcagtcaattagtgttcatacatttta |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| ||||||||||||||| ||||||||| |
|
|
| T |
8985666 |
tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtaacaattacttttagtcaattagtgttcctacatttta |
8985765 |
T |
|
| Q |
470 |
ggagcaagtagttgttacttgctgatgtattggcaacgtgtgttgttcagttttgttttttaaa |
533 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8985766 |
ggagcaagtagttgttacttgctgaagtattggcaacgtgtgttgttcagttttgttttttaaa |
8985829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 370 - 529
Target Start/End: Complemental strand, 35973540 - 35973381
Alignment:
| Q |
370 |
tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtatcatttattttcagtcaattagtgttcatacatttta |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||| |
|
|
| T |
35973540 |
tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctctatcagttatttttagtcaattagtgttcctacatttta |
35973441 |
T |
|
| Q |
470 |
ggagcaagtagttgttacttgctgatgtattggcaacgtgtgttgttcagttttgttttt |
529 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35973440 |
ggagcaagtagttgttacttgctgaagtattggcaacgtgtgttgttcagttttgttttt |
35973381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 370 - 529
Target Start/End: Complemental strand, 35994952 - 35994793
Alignment:
| Q |
370 |
tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtatcatttattttcagtcaattagtgttcatacatttta |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||| |
|
|
| T |
35994952 |
tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctctatcagttatttttagtcaattagtgttcctacatttta |
35994853 |
T |
|
| Q |
470 |
ggagcaagtagttgttacttgctgatgtattggcaacgtgtgttgttcagttttgttttt |
529 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35994852 |
ggagcaagtagttgttacttgctgaagtattggcaacgtgtgttgttcagttttgttttt |
35994793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 476; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 14 - 533
Target Start/End: Original strand, 43445096 - 43445615
Alignment:
| Q |
14 |
cacaatccactgcagaagctgaattcatagcagcaacagctgctgcaaatcaagttttatggttaaaaaaggttttatgtgatttagatatctagcagaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
43445096 |
cacaatccactgcagaagctgaattcatagcagcaacagctgctgcaaatcaagttttatggttaaaaaaggttttatgtgatttagatatccatcagaa |
43445195 |
T |
|
| Q |
114 |
tgataagacaaaaatctttgtcgacagtcaggcagcaattgcaatttcaaaggatccagtatgtcatgggaagactaaacatttcaacatcaagctctac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
43445196 |
tgataagacaaaaatctttgtcgacagtcaggcatcaattgcaatttcaaaggatccagtatgtcatgggaagactaaacatttcaacattaagttctac |
43445295 |
T |
|
| Q |
214 |
ttcttaagagaggttcaacaaagtggagaagtcactttggtttattgcagatcagaagagcaactggcagatttatttacaaaaccacttcctgttggca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43445296 |
ttcttaagagaggttcaacaaagtggagaagtcactttggtttattgcagatcagaagagcaactggcagatttatttacaaaaccacttcctgttagca |
43445395 |
T |
|
| Q |
314 |
agtttcagttcttaaggcagaaaattggagtttgcagatcctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggcttttcttt |
413 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43445396 |
agtttgagttcttaaggcagaaaattggagtttgcagatcctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggcttttcttt |
43445495 |
T |
|
| Q |
414 |
atgtttattttattctgtatcatttattttcagtcaattagtgttcatacattttaggagcaagtagttgttacttgctgatgtattggcaacgtgtgtt |
513 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43445496 |
atgtttattttattctgtatcagttatttttagtcaattagtgttcctacattttaggagcaagtagttgttacttgctgaagtattggcaacgtgtgtt |
43445595 |
T |
|
| Q |
514 |
gttcagttttgttttttaaa |
533 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
43445596 |
gttcagttttgttttttaaa |
43445615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 14 - 406
Target Start/End: Original strand, 18014732 - 18015122
Alignment:
| Q |
14 |
cacaatccactgcagaagctgaattcatagcagcaacagctgctgcaaatcaagttttatggttaaaaaaggttttatgtgatttagatatctagcagaa |
113 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||| || | |||||||||||| |||||||| ||| ||||||||||||| || | | ||||| |
|
|
| T |
18014732 |
cacagtccactgcagaagctgagttcatagcagcaacagcagccgtaaatcaagttttgtggttaaagaagattttatgtgatttgcatcttcaacagaa |
18014831 |
T |
|
| Q |
114 |
tgataagacaaaaatctttgtcgacagtcaggcagcaattgcaatttcaaaggatccagtatgtcatgggaagactaaacatttcaacatcaagctctac |
213 |
Q |
| |
|
| |||| | | || | ||| | |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
18014832 |
tcataaaatagaagtttttattgacaaccaggcagcaattgcaatttcaaaggatccagtgtgtcatggcaagactaaacattttaacatcaagctctac |
18014931 |
T |
|
| Q |
214 |
ttcttaagagaggttcaacaaagtggagaagtcactttggtttattgcagatcagaagagcaactggcagatttatttacaaaaccacttcctgttggca |
313 |
Q |
| |
|
|||||||||||| | || |||| ||||||||| |||||||||||||||| ||| | || ||| | ||||| | |||||||| ||||||||||| || |
|
|
| T |
18014932 |
ttcttaagagagatgcagcaaaatggagaagtaactttggtttattgcaagtcaaaggatcaattagcagacatgtttacaaagccacttcctgtcaaca |
18015031 |
T |
|
| Q |
314 |
agtttcagttcttaaggcagaaaattggagtttgcagatcctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggct |
406 |
Q |
| |
|
||||| |||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
18015032 |
agtttgagtttttaaggcaaaaagttggagtttgcagatcctaaagcaaggaggagtgttaatta-ttgctttt-ggactgcattacgtggct |
18015122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 370 - 533
Target Start/End: Original strand, 43441329 - 43441495
Alignment:
| Q |
370 |
tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtatcatttattttcagtcaattagt-gttcatacatttt |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||||| |||| ||| |||| |
|
|
| T |
43441329 |
tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctatattagttgttttcagtcaattagtggttcctacctttt |
43441428 |
T |
|
| Q |
469 |
aggagcaagtagttgttacttgc--tgatgtattggcaacgtgtgttgttcagttttgttttttaaa |
533 |
Q |
| |
|
||||||||||||||||||||||| ||| || ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43441429 |
aggagcaagtagttgttacttgctgtgaagtgttggcaacgtgtgttgttctgttttgttttttaaa |
43441495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 641 - 820
Target Start/End: Original strand, 32746839 - 32747020
Alignment:
| Q |
641 |
tcaaagagagatagatattcaaagagacttgagactagtgatgaaagatggaatgtttccaaccaaatgagttgatgacaagtcaagtactctaaggttt |
740 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||| | | || || || ||||||||| |||||| |
|
|
| T |
32746839 |
tcaaagagagatagatattcaa-gagacttgagactagtgatgaaagatggaatatttccaacaaaattattggaggataaatcaagtacttggaggttt |
32746937 |
T |
|
| Q |
741 |
gtcaagttgctaaggcaatgatgaaaatgaccactcattgtat---agctgaggtcaagttccagcatattcttcattccaca |
820 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||| ||| |||||||||||||||| | | |||||||||| |||| |
|
|
| T |
32746938 |
gtcaagttgctaaggcaatgtggaaaatcaccactcattctatttctgctgaggtcaagttcctgtaaattcttcatttcaca |
32747020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 531 - 640
Target Start/End: Original strand, 32746644 - 32746753
Alignment:
| Q |
531 |
aaagttccatttctccttgaattcacaatgcaatttctaagttggaggactttcaattgaaaagtagggtgccatgatggactttctgtagtttccacat |
630 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||| |||||||||| ||| | |||||||| |||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
32746644 |
aaagttccatttctccttgaatttagaaagcaatttttaagttggagaactcttaattgaaatgtagggtgccatgatggattttcttcagtttccacat |
32746743 |
T |
|
| Q |
631 |
acaagttatt |
640 |
Q |
| |
|
||| ||||| |
|
|
| T |
32746744 |
gcaatttatt |
32746753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 338 - 375
Target Start/End: Original strand, 32529109 - 32529146
Alignment:
| Q |
338 |
ttggagtttgcagatcctaaagcaaggaggagtgttaa |
375 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
32529109 |
ttggtgtttgcagctcctaaagcaaggaggagtgttaa |
32529146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 14 - 533
Target Start/End: Original strand, 26257546 - 26258066
Alignment:
| Q |
14 |
cacaatccactgcagaagctgaattcatagcagcaacagctgctgcaaatcaagttttatggttaaaaaaggttttatgtgatttagatatctagcagaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26257546 |
cacaatccactgcagaagctgaattcatagcagcaacagccgctgcaaatcaagttttatggttaaaaaaggttttatgtgatttagatatccagcagaa |
26257645 |
T |
|
| Q |
114 |
tgataagacaaaaatctttgtcgacagtcaggcagcaattgcaatttcaaaggatccagtatgtcatgggaagactaaacatttcaacatcaagctctac |
213 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26257646 |
tgataagacaaaaatcattgtagacagtcaggcaacaattgcaatttcaaaggatccagtatgtcatgggaagactaaacatttcaacataaagctctac |
26257745 |
T |
|
| Q |
214 |
ttcttaagagaggttcaacaaagtggagaagtcactttggtttattgcagatcagaagagcaactggcagatttatttacaaaaccacttcctgttggca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26257746 |
ttcttaagagaggttcaacaaagtggagaagtcactttggtttattgcagatcaaaagagcaagtggcagatttatttacaaaaccacttcctgttagca |
26257845 |
T |
|
| Q |
314 |
agtttcagttcttaaggcagaaaattggagtttgcagatcctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggcttttcttt |
413 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26257846 |
agtttgagttcttaaggcagaaaattggagtttgcagatcctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggcttttcttt |
26257945 |
T |
|
| Q |
414 |
atgtttattttattctgtatcattta-ttttcagtcaattagtgttcatacattttaggagcaagtagttgttacttgctgatgtattggcaacgtgtgt |
512 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26257946 |
atgtttattttattctgtatcagttattttttagtcaattagtgttcctacattttaggagcaagtagttgttacttgctgaagtattggcaacgtgtgt |
26258045 |
T |
|
| Q |
513 |
tgttcagttttgttttttaaa |
533 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
26258046 |
tgttcagttttgttttttaaa |
26258066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 3e-81; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 16942530 - 16942767
Alignment:
| Q |
14 |
cacaatccactgcagaagctgaattcatagcagcaacagctgctgcaaatcaagttttatggttaaaaaaggttttatgtgatttagatatctagcagaa |
113 |
Q |
| |
|
||||||||| ||| |||||||| ||||||| ||||||| ||| | |||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
16942530 |
cacaatccaatgctgaagctgagttcatagtagcaacaactgttataaatcaagttttgtggttaaaagaggttttatgtgatttagatatccagcagaa |
16942629 |
T |
|
| Q |
114 |
tgataagacaaaaatctttgtcgacagtcaggcagcaattgcaatttcaaaggatccagtatgtcatgggaagactaaacatttcaacatcaagctctac |
213 |
Q |
| |
|
|||||||||| |||||| | | |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
16942630 |
tgataagacagaaatctgttttgacaatcaggcagcaattgcaatttcaaaggatccagtatgttatgggaagactaaacatttcaatatcaagctctac |
16942729 |
T |
|
| Q |
214 |
ttcttaagagaggttcaacaaagtggagaagtcacttt |
251 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
16942730 |
ttcttacaagaggtgcaacaaagtggagaagtcacttt |
16942767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 370 - 523
Target Start/End: Original strand, 16937482 - 16937639
Alignment:
| Q |
370 |
tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtatca-tttatt--ttcagtcaattagtg-ttcatacat |
465 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||| ||||| |||||||||| ||| ||| |||| | || |||||||||||| ||| ||||| |
|
|
| T |
16937482 |
tgttaattatttgctttttggactgcattacgtggcttttatttatccttattttattttgtttcagtttagtgttttagtcaattagtggttcctacat |
16937581 |
T |
|
| Q |
466 |
tttaggagcaagtagttgttacttgctgatgtattggcaacgtgtgttgttcagtttt |
523 |
Q |
| |
|
||||||||||||| ||||||||||||||| || ||||||| ||||| ||||||||||| |
|
|
| T |
16937582 |
tttaggagcaagtggttgttacttgctgaagtgttggcaatgtgtgatgttcagtttt |
16937639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 793 - 836
Target Start/End: Original strand, 2126792 - 2126835
Alignment:
| Q |
793 |
caagttccagcatattcttcattccacatagtcctatgctactc |
836 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
2126792 |
caagttccagcatattcttcattccacatagtcctgtggtactc |
2126835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 338 - 375
Target Start/End: Original strand, 28394896 - 28394933
Alignment:
| Q |
338 |
ttggagtttgcagatcctaaagcaaggaggagtgttaa |
375 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
28394896 |
ttggtgtttgcagctcctaaagcaaggaggagtgttaa |
28394933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 3e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 370 - 533
Target Start/End: Complemental strand, 38060857 - 38060694
Alignment:
| Q |
370 |
tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtatcatttattttcagtcaattagtgttcatacatttta |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||| |
|
|
| T |
38060857 |
tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtatcagttattttcagtcaattagttttcctacatttta |
38060758 |
T |
|
| Q |
470 |
ggagcaagtagttgttacttgctgatgtattggcaacgtgtgttgttcagttttgttttttaaa |
533 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38060757 |
ggagcaagtagttgttacttgctgaagtgttggcaacgtgtgttgttcagttttgttttttaaa |
38060694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 370 - 456
Target Start/End: Original strand, 2765376 - 2765461
Alignment:
| Q |
370 |
tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtatcatttattttcagtcaattagtg |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||| |||||||||||||||| |
|
|
| T |
2765376 |
tgttaattatttgcttttaggactgcattatgtagcttttctttatgtttattttattttgtgtcagtta-tttcagtcaattagtg |
2765461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 3e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 641 - 827
Target Start/End: Original strand, 4913828 - 4914016
Alignment:
| Q |
641 |
tcaaagagagatagatattcaaagagacttgagactagtgatgaaagatggaatgtttccaaccaaatgagttgatgacaagtcaagtactctaaggttt |
740 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||| | |||| || || ||||||||||| ||| || |
|
|
| T |
4913828 |
tcaaagagagatagatattcaa-gagacttgagactaatgatgaaagatggaatgtttccaacaaaattatttgaggataaatcaagtactctgaggctt |
4913926 |
T |
|
| Q |
741 |
gtcaagttgctaaggcaatgatgaaaatgaccactcattgtat---agctgaggtcaagttccagcatattcttcattccacatagtcct |
827 |
Q |
| |
|
|||||||| |||||||| ||| |||||| |||||||||| || |||||||||||||||| ||| ||||||||||||||||| |||| |
|
|
| T |
4913927 |
gtcaagtttctaaggcattgaggaaaataaccactcattccatttctgctgaggtcaagttcctgcagattcttcattccacataatcct |
4914016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 531 - 641
Target Start/End: Original strand, 4913636 - 4913746
Alignment:
| Q |
531 |
aaagttccatttctccttgaattcacaatgcaatttctaagttggaggactttcaattgaaaagtagggtgccatgatggactttctgtagtttccacat |
630 |
Q |
| |
|
|||||||||| |||| ||||||| | || |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4913636 |
aaagttccatctctctttgaatttagaaagcaatttctaagttggagaacttttaattgaaaagtagggtgccatgatggactttcttcagtttccacat |
4913735 |
T |
|
| Q |
631 |
acaagttattt |
641 |
Q |
| |
|
||||||||||| |
|
|
| T |
4913736 |
acaagttattt |
4913746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 1e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 149 - 260
Target Start/End: Complemental strand, 24012252 - 24012141
Alignment:
| Q |
149 |
caattgcaatttcaaaggatccagtatgtcatgggaagactaaacatttcaacatcaagctctacttcttaagagaggttcaacaaagtggagaagtcac |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| | || |||| ||||||||| || |
|
|
| T |
24012252 |
caattgcaatttcaaaggatccagtatgtcatgggaagactaaacattttaacatcaagctttacttcttacgagaaatgcagcaaaatggagaagtgac |
24012153 |
T |
|
| Q |
249 |
tttggtttattg |
260 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24012152 |
tttggtttattg |
24012141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 42040039 - 42039989
Alignment:
| Q |
354 |
ctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggct |
406 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
42040039 |
ctaaagcaaggaggagtgttaatta-ttgctttt-ggactgcattacgtggct |
42039989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 338 - 375
Target Start/End: Complemental strand, 6831344 - 6831307
Alignment:
| Q |
338 |
ttggagtttgcagatcctaaagcaaggaggagtgttaa |
375 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
6831344 |
ttggtgtttgcagctcctaaagcaaggaggagtgttaa |
6831307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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