View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15873_low_11 (Length: 421)

Name: NF15873_low_11
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15873_low_11
NF15873_low_11
[»] chr2 (2 HSPs)
chr2 (222-408)||(4913828-4914016)
chr2 (112-222)||(4913636-4913746)
[»] chr8 (4 HSPs)
chr8 (18-114)||(43445519-43445615)
chr8 (222-401)||(32746839-32747020)
chr8 (112-221)||(32746644-32746753)
chr8 (21-114)||(43441399-43441495)
[»] chr7 (6 HSPs)
chr7 (18-114)||(43582614-43582710)
chr7 (18-114)||(43586831-43586927)
chr7 (26-114)||(8985741-8985829)
chr7 (18-110)||(35965856-35965948)
chr7 (18-110)||(35973381-35973473)
chr7 (18-110)||(35994793-35994885)
[»] chr6 (1 HSPs)
chr6 (21-114)||(26257973-26258066)
[»] chr3 (1 HSPs)
chr3 (18-114)||(38060694-38060790)
[»] chr4 (2 HSPs)
chr4 (26-104)||(16937560-16937639)
chr4 (374-417)||(2126792-2126835)


Alignment Details
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 222 - 408
Target Start/End: Original strand, 4913828 - 4914016
Alignment:
Q  222 tcaaagagagatagatattcaaagagacttgagactagtgatgaaagatggaatgtttccaaccaaatgagttgatgacaagtcaagtactctaaggttt 321  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||| | |||| || || ||||||||||| ||| ||    
T  4913828 tcaaagagagatagatattcaa-gagacttgagactaatgatgaaagatggaatgtttccaacaaaattatttgaggataaatcaagtactctgaggctt 4913926  T
Q  322 gtcaagttgctaaggcaatgatgaaaatgaccactcattgtat---agctgaggtcaagttccagcatattcttcattccacatagtcct 408  Q
    |||||||| |||||||| ||| |||||| ||||||||||  ||    |||||||||||||||| ||| ||||||||||||||||| ||||    
T  4913927 gtcaagtttctaaggcattgaggaaaataaccactcattccatttctgctgaggtcaagttcctgcagattcttcattccacataatcct 4914016  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 4913636 - 4913746
Alignment:
Q  112 aaagttccatttctccttgaattcacaatgcaatttctaagttggaggactttcaattgaaaagtagggtgccatgatggactttctgtagtttccacat 211  Q
    |||||||||| |||| ||||||| | || |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||  |||||||||||    
T  4913636 aaagttccatctctctttgaatttagaaagcaatttctaagttggagaacttttaattgaaaagtagggtgccatgatggactttcttcagtttccacat 4913735  T
Q  212 acaagttattt 222  Q
    |||||||||||    
T  4913736 acaagttattt 4913746  T

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Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 43445519 - 43445615
Alignment:
Q  18 ttattttcagtcaattagtgttcatacattttaggagcaagtagttgttacttgctgatgtattggcaacgtgtgttgttcagttttgttttttaaa 114  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43445519 ttatttttagtcaattagtgttcctacattttaggagcaagtagttgttacttgctgaagtattggcaacgtgtgttgttcagttttgttttttaaa 43445615  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 222 - 401
Target Start/End: Original strand, 32746839 - 32747020
Alignment:
Q  222 tcaaagagagatagatattcaaagagacttgagactagtgatgaaagatggaatgtttccaaccaaatgagttgatgacaagtcaagtactctaaggttt 321  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||| | | || || || |||||||||   ||||||    
T  32746839 tcaaagagagatagatattcaa-gagacttgagactagtgatgaaagatggaatatttccaacaaaattattggaggataaatcaagtacttggaggttt 32746937  T
Q  322 gtcaagttgctaaggcaatgatgaaaatgaccactcattgtat---agctgaggtcaagttccagcatattcttcattccaca 401  Q
    ||||||||||||||||||||  |||||| |||||||||| |||    |||||||||||||||| | | |||||||||| ||||    
T  32746938 gtcaagttgctaaggcaatgtggaaaatcaccactcattctatttctgctgaggtcaagttcctgtaaattcttcatttcaca 32747020  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 32746644 - 32746753
Alignment:
Q  112 aaagttccatttctccttgaattcacaatgcaatttctaagttggaggactttcaattgaaaagtagggtgccatgatggactttctgtagtttccacat 211  Q
    ||||||||||||||||||||||| | || ||||||| |||||||||| ||| | |||||||| |||||||||||||||||| |||||  |||||||||||    
T  32746644 aaagttccatttctccttgaatttagaaagcaatttttaagttggagaactcttaattgaaatgtagggtgccatgatggattttcttcagtttccacat 32746743  T
Q  212 acaagttatt 221  Q
     ||| |||||    
T  32746744 gcaatttatt 32746753  T

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Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 43441399 - 43441495
Alignment:
Q  21 ttttcagtcaattagtg-ttcatacattttaggagcaagtagttgttacttgctg--atgtattggcaacgtgtgttgttcagttttgttttttaaa 114  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||  | || ||||||||||||||||||| |||||||||||||||    
T  43441399 ttttcagtcaattagtggttcctaccttttaggagcaagtagttgttacttgctgtgaagtgttggcaacgtgtgttgttctgttttgttttttaaa 43441495  T

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Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 43582614 - 43582710
Alignment:
Q  18 ttattttcagtcaattagtgttcatacattttaggagcaagtagttgttacttgctgatgtattggcaacgtgtgttgttcagttttgttttttaaa 114  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43582614 ttatttttagtcaattagtgttcctacattttaggagcaagtagttgttacttgctgaagtattggcaacgtgtgttgttcagttttgttttttaaa 43582710  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 43586831 - 43586927
Alignment:
Q  18 ttattttcagtcaattagtgttcatacattttaggagcaagtagttgttacttgctgatgtattggcaacgtgtgttgttcagttttgttttttaaa 114  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43586831 ttatttttagtcaattagtgttcctacattttaggagcaagtagttgttacttgctgaagtattggcaacgtgtgttgttcagttttgttttttaaa 43586927  T

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Target: chr7; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 8985741 - 8985829
Alignment:
Q  26 agtcaattagtgttcatacattttaggagcaagtagttgttacttgctgatgtattggcaacgtgtgttgttcagttttgttttttaaa 114  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8985741 agtcaattagtgttcctacattttaggagcaagtagttgttacttgctgaagtattggcaacgtgtgttgttcagttttgttttttaaa 8985829  T

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Target: chr7; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 35965948 - 35965856
Alignment:
Q  18 ttattttcagtcaattagtgttcatacattttaggagcaagtagttgttacttgctgatgtattggcaacgtgtgttgttcagttttgttttt 110  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35965948 ttatttttagtcaattagtgttcctacattttaggagcaagtagttgttacttgctgaagtattggcaacgtgtgttgttcagttttgttttt 35965856  T

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Target: chr7; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 35973473 - 35973381
Alignment:
Q  18 ttattttcagtcaattagtgttcatacattttaggagcaagtagttgttacttgctgatgtattggcaacgtgtgttgttcagttttgttttt 110  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35973473 ttatttttagtcaattagtgttcctacattttaggagcaagtagttgttacttgctgaagtattggcaacgtgtgttgttcagttttgttttt 35973381  T

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Target: chr7; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 35994885 - 35994793
Alignment:
Q  18 ttattttcagtcaattagtgttcatacattttaggagcaagtagttgttacttgctgatgtattggcaacgtgtgttgttcagttttgttttt 110  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35994885 ttatttttagtcaattagtgttcctacattttaggagcaagtagttgttacttgctgaagtattggcaacgtgtgttgttcagttttgttttt 35994793  T

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Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 26257973 - 26258066
Alignment:
Q  21 ttttcagtcaattagtgttcatacattttaggagcaagtagttgttacttgctgatgtattggcaacgtgtgttgttcagttttgttttttaaa 114  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26257973 tttttagtcaattagtgttcctacattttaggagcaagtagttgttacttgctgaagtattggcaacgtgtgttgttcagttttgttttttaaa 26258066  T

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Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 38060790 - 38060694
Alignment:
Q  18 ttattttcagtcaattagtgttcatacattttaggagcaagtagttgttacttgctgatgtattggcaacgtgtgttgttcagttttgttttttaaa 114  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  38060790 ttattttcagtcaattagttttcctacattttaggagcaagtagttgttacttgctgaagtgttggcaacgtgtgttgttcagttttgttttttaaa 38060694  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 16937560 - 16937639
Alignment:
Q  26 agtcaattagtg-ttcatacattttaggagcaagtagttgttacttgctgatgtattggcaacgtgtgttgttcagtttt 104  Q
    |||||||||||| ||| |||||||||||||||||| ||||||||||||||| || ||||||| ||||| |||||||||||    
T  16937560 agtcaattagtggttcctacattttaggagcaagtggttgttacttgctgaagtgttggcaatgtgtgatgttcagtttt 16937639  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 374 - 417
Target Start/End: Original strand, 2126792 - 2126835
Alignment:
Q  374 caagttccagcatattcttcattccacatagtcctatgctactc 417  Q
    ||||||||||||||||||||||||||||||||||| || |||||    
T  2126792 caagttccagcatattcttcattccacatagtcctgtggtactc 2126835  T

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