View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15873_low_18 (Length: 322)

Name: NF15873_low_18
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15873_low_18
NF15873_low_18
[»] chr7 (2 HSPs)
chr7 (1-315)||(41875668-41875982)
chr7 (64-126)||(5269468-5269530)
[»] chr8 (4 HSPs)
chr8 (61-119)||(31705029-31705089)
chr8 (61-119)||(1470922-1470981)
chr8 (217-288)||(40868457-40868528)
chr8 (77-126)||(41620374-41620423)
[»] chr3 (1 HSPs)
chr3 (63-131)||(32069084-32069151)
[»] chr2 (2 HSPs)
chr2 (75-119)||(3423849-3423893)
chr2 (62-101)||(6993791-6993831)
[»] chr1 (4 HSPs)
chr1 (77-129)||(36641810-36641862)
chr1 (137-191)||(24817795-24817849)
chr1 (231-288)||(24817944-24818001)
chr1 (75-115)||(45234146-45234186)
[»] chr6 (1 HSPs)
chr6 (61-119)||(27857320-27857378)
[»] chr5 (1 HSPs)
chr5 (61-113)||(35960365-35960417)
[»] chr4 (1 HSPs)
chr4 (79-119)||(1404367-1404407)


Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 41875982 - 41875668
Alignment:
Q  1 tattatagctcaaaaaatcaattcaacactgaaaaatgattataacagataaaaattaggttatagcttatattaaataatttgaccttattttatcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41875982 tattatagctcaaaaaatcaattcaacactgaaaaatgattataacggataaaaattaggttatagcttatattaaataatttgaccttattttatcttt 41875883  T
Q  101 tagtacagaaataacttatttataagtaagtacttatataataagtgtttttgctactaacacaaaattaaattgtttatctaaataagtcttggatgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41875882 tagtacagaaataacttatttataagtaagtacttatataataagtgtttttgctactaacacaaaattaagttgtttatctaaataagtcttggatgat 41875783  T
Q  201 ctataatcaacattaatcaacattcgacactctacctcagtatgcggccatcattagaagaaggtgtaaatatagcaccggtttcttgtcgcaatatatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||     
T  41875782 ctataatcaacattaatcaacattcgacactctacctcagtatgcggccatcattagaagaaggtataaatatagcaccggtttcttgtcgtaatatata 41875683  T
Q  301 cgcaacttcatctct 315  Q
    |||||||||||||||    
T  41875682 cgcaacttcatctct 41875668  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 5269530 - 5269468
Alignment:
Q  64 tagcttatattaaataatttgaccttattttatcttttagtacagaaataacttatttataag 126  Q
    |||||||| | |||||||||||| ||||||||||||||| || |||||||| |||| ||||||    
T  5269530 tagcttatctgaaataatttgactttattttatcttttattaaagaaataatttatatataag 5269468  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 31705089 - 31705029
Alignment:
Q  61 ttatagcttatattaaa--taatttgaccttattttatcttttagtacagaaataacttat 119  Q
    ||||||||||||| |||  ||||||||| | |||||||||||||||||||||||| |||||    
T  31705089 ttatagcttatatgaaacgtaatttgacatgattttatcttttagtacagaaatagcttat 31705029  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 1470922 - 1470981
Alignment:
Q  61 ttatagcttatattaaa-taatttgaccttattttatcttttagtacagaaataacttat 119  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||| || ||||||| |||||    
T  1470922 ttatagcttatatgaaagtaatttgactttattttatcttttattatagaaatagcttat 1470981  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 40868457 - 40868528
Alignment:
Q  217 tcaacattcgacactctacctcagtatgcggccatcattagaagaaggtgtaaatatagcaccggtttcttg 288  Q
    ||||||||| ||| | |||||||||||||| ||||||||| ||| | || |||| |||||||| ||||||||    
T  40868457 tcaacattcaacagtgtacctcagtatgcgcccatcattataaggatgtataaaaatagcaccagtttcttg 40868528  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 41620374 - 41620423
Alignment:
Q  77 ataatttgaccttattttatcttttagtacagaaataacttatttataag 126  Q
    |||||||||| ||||||||||||||  |||| ||||||||||| ||||||    
T  41620374 ataatttgactttattttatcttttgttacaaaaataacttatatataag 41620423  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 32069151 - 32069084
Alignment:
Q  63 atagcttatattaaataatttgaccttattttatcttttagtacagaaataacttatttataagtaagt 131  Q
    ||||||| ||| |||| ||||||| ||||||||||||||  || ||||||||||||||||||| |||||    
T  32069151 atagcttttatgaaattatttgactttattttatctttt-ttatagaaataacttatttataattaagt 32069084  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 3423849 - 3423893
Alignment:
Q  75 aaataatttgaccttattttatcttttagtacagaaataacttat 119  Q
    |||||||||||| |||||||||||||| ||||| |||||||||||    
T  3423849 aaataatttgactttattttatcttttggtacaaaaataacttat 3423893  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 6993791 - 6993831
Alignment:
Q  62 tatagcttatattaa-ataatttgaccttattttatctttt 101  Q
    |||||||||||| || |||||||||||||||||||||||||    
T  6993791 tatagcttatatgaatataatttgaccttattttatctttt 6993831  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 36641862 - 36641810
Alignment:
Q  77 ataatttgaccttattttatcttttagtacagaaataacttatttataagtaa 129  Q
    |||||||||| ||||||||||||||  || ||||||||||||| |||||||||    
T  36641862 ataatttgactttattttatcttttgttatagaaataacttatatataagtaa 36641810  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 24817795 - 24817849
Alignment:
Q  137 tataataagtgtttttgctactaacacaaaattaaattgtttatctaaataagtc 191  Q
    |||||||||||||| || ||| ||||| || |||| |||||||||||||||||||    
T  24817795 tataataagtgtttatgttacaaacactaagttaagttgtttatctaaataagtc 24817849  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 24817944 - 24818001
Alignment:
Q  231 tctacctcagtatgcggccatcattagaagaaggtgtaaatatagcaccggtttcttg 288  Q
    ||||||||| ||||||||||||||| ||||||||| || | |||||||  ||||||||    
T  24817944 tctacctcattatgcggccatcatttgaagaaggtatatagatagcacttgtttcttg 24818001  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 45234186 - 45234146
Alignment:
Q  75 aaataatttgaccttattttatcttttagtacagaaataac 115  Q
    |||||||||||| ||||||||||||||| || |||||||||    
T  45234186 aaataatttgactttattttatcttttattatagaaataac 45234146  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 27857378 - 27857320
Alignment:
Q  61 ttatagcttatattaaataatttgaccttattttatcttttagtacagaaataacttat 119  Q
    ||||||||||||||||| | |||||| ||||||||||||||  |||| || ||||||||    
T  27857378 ttatagcttatattaaacagtttgactttattttatcttttgttacaaaagtaacttat 27857320  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 35960417 - 35960365
Alignment:
Q  61 ttatagcttatattaaataatttgaccttattttatcttttagtacagaaata 113  Q
    |||||| |||||| ||||| |||||| ||||||||||||||| || |||||||    
T  35960417 ttatagtttatatgaaatagtttgactttattttatcttttattatagaaata 35960365  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 1404407 - 1404367
Alignment:
Q  79 aatttgaccttattttatcttttagtacagaaataacttat 119  Q
    |||||||||||||||||||||||| || ||||||| |||||    
T  1404407 aatttgaccttattttatcttttattatagaaatagcttat 1404367  T

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