View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15873_low_2 (Length: 628)
Name: NF15873_low_2
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15873_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 187 - 621
Target Start/End: Complemental strand, 29319252 - 29318818
Alignment:
| Q |
187 |
aatccaatggaactcttctgcttgtcaaaatttcaagtctttatcatcgaaagaaactagcacatgctgtgcatcagctttgtctctttttggaatagga |
286 |
Q |
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| T |
29319252 |
aatccaatggaactcttctgcttgtcaaaatttcaagtctttatcatcgaaagaaactagcacatgttgtgcatcagctttgtctctttttggaatagga |
29319153 |
T |
|
| Q |
287 |
tttgcacggcatctaagagaaacctctcagttttatcttcaagatcttcaaacttcaatttcatgcatgcaagattttcaatcaaagcttaactctttat |
386 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29319152 |
tttgcacggcatctaagagaaacctctcaatttaatcttcaagatcttcaaacttcaatttcatgcatgcaagattttcaatcaaagcttaactctttat |
29319053 |
T |
|
| Q |
387 |
cactttacaacaatttagtcaactcttgctttgaccctcttcaatttgttatctctcctaacatatgtgcaggtattgaaactgttcaagattggaatga |
486 |
Q |
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| T |
29319052 |
cactttacaacaatttagtcaactcttgctttgaccctcttcaatttgttatctctcctaacatatgtgcaggtattgaaactgttcaagattggaatga |
29318953 |
T |
|
| Q |
487 |
gaaggtaggtcagaattcacctctcaacactgcttgtaaaccagatctcactgatctttctcaatgcgctttgtgtgttgttgctggattagaggttaag |
586 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||| |
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| T |
29318952 |
gaaggtaggtcagaattcacctctcaacactgcttgtaaaccagatctcactgatctttctcaatgcgatgtgtgtgttgctgctggattagaggttaag |
29318853 |
T |
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| Q |
587 |
cagaagcttgtttcagttagtggcaattcttctca |
621 |
Q |
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| T |
29318852 |
gataagcttgtttcaattagtggcaattcttctca |
29318818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 153 - 609
Target Start/End: Original strand, 717199 - 717655
Alignment:
| Q |
153 |
ctacatgtcctatggaccttaactatgtcctaagaatccaatggaactcttctgcttgtcaaaatttcaagtctttatcatcgaaagaaactagcacatg |
252 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
717199 |
ctacatgtcctatggaccttaactatgtcctaagaattcattggaactcttcagcttgtcaaaatttcaattctttatcatccaaagaaactagcacatg |
717298 |
T |
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| Q |
253 |
ctgtgcatcagctttgtctctttttggaataggatttgcacggcatctaagagaaacctctcagttttatcttcaagatcttcaaacttcaatttcatgc |
352 |
Q |
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| T |
717299 |
ttgtgcatctgttttgtctctctttggaataggatttgcacagcatcttaaagaaacttcacagttcaatcttcaagatcttcaaacttcaaattcatgc |
717398 |
T |
|
| Q |
353 |
atgcaagattttcaatcaaagcttaactctttatcactttacaacaatttagtcaactcttgctttgaccctcttcaatttgttatctctcctaacatat |
452 |
Q |
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| T |
717399 |
atgcaagattttcaatcaaagcttaactctttatcactttacaacaacttggtcaactcttgttttgaccctcttcaatttgttatctctcgtaacatat |
717498 |
T |
|
| Q |
453 |
gtgcaggtattgaaactgttcaagattggaatgagaaggtaggtcagaattcacctctcaacactgcttgtaaaccagatctcactgatctttctcaatg |
552 |
Q |
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|||||||||||||||||||||| |||||||||||||| || |||||||||||| || | || |||||||||||||||||||||||| ||||||||||||| |
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| T |
717499 |
gtgcaggtattgaaactgttcatgattggaatgagaaagtgggtcagaattcatctttgaatactgcttgtaaaccagatctcactcatctttctcaatg |
717598 |
T |
|
| Q |
553 |
cgctttgtgtgttgttgctggattagaggttaagcagaagcttgtttcagttagtgg |
609 |
Q |
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| | || |||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
717599 |
tgatgcatgcgttgctgctggattacaggttaagcagaagcttgtttcagttagtgg |
717655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 475
Target Start/End: Original strand, 26942185 - 26942214
Alignment:
| Q |
446 |
aacatatgtgcaggtattgaaactgttcaa |
475 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
26942185 |
aacatatgtgcaggtattgaaactgttcaa |
26942214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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