View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15873_low_25 (Length: 287)
Name: NF15873_low_25
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15873_low_25 |
 | |
|
| [»] scaffold0269 (1 HSPs) |
| | |
|
| [»] scaffold0025 (1 HSPs) |
| | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
| [»] scaffold0026 (1 HSPs) |
| | |
|
| [»] scaffold0146 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 244603 - 244855
Alignment:
| Q |
18 |
ttttcatatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
244603 |
ttttcatatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattac |
244702 |
T |
|
| Q |
118 |
aataatgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggaggttacatattcatttgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
244703 |
aataatgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggaggttacatattcatttgc |
244802 |
T |
|
| Q |
218 |
acattgatttgtgaaggcttattatggctagacgttacatttccacaaacacc |
270 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
244803 |
acattgatttgtgaaggctaattatttctagacgttacaattccacaaacacc |
244855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 270
Target Start/End: Complemental strand, 29950117 - 29949854
Alignment:
| Q |
7 |
attctacttccttttcatatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaa |
106 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29950117 |
attcaacttctttttcatatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaa |
29950018 |
T |
|
| Q |
107 |
ccactaattacaataatgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggaggttaca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29950017 |
ccactaattacaataatgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagctggtggctaatcaatgcatgaggaggttaca |
29949918 |
T |
|
| Q |
207 |
tattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacc |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
29949917 |
tattcatttgcacattgatttgtgaaggctaattatttctagacgttacaattccacaaacacc |
29949854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 270
Target Start/End: Complemental strand, 29951755 - 29951492
Alignment:
| Q |
7 |
attctacttccttttcatatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaa |
106 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29951755 |
attcaacttctttttcatatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaa |
29951656 |
T |
|
| Q |
107 |
ccactaattacaataatgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggaggttaca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29951655 |
ccactaattacaataatgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagctggtggctaatcaatgcatgaggaggttaca |
29951556 |
T |
|
| Q |
207 |
tattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacc |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
29951555 |
tattcatttgcacattgatttgtgaaggctaattatttctagacgttacaattccacaaacacc |
29951492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 27402071 - 27401975
Alignment:
| Q |
19 |
tttcatatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaatt |
115 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| ||| |||||| |||| ||||| ||||||||||| ||||||||||| ||||||| ||||||||| |
|
|
| T |
27402071 |
tttcatatcatttttgtgctctttttatatgggctaattacaagatggctttgattctaaaactctcagaaaatgaaaataaatgcagccactaatt |
27401975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 15017805 - 15018057
Alignment:
| Q |
18 |
ttttcatatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15017805 |
ttttcatatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaagaaaatgcaaccactaattac |
15017904 |
T |
|
| Q |
118 |
aataatgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggaggttacatattcatttgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15017905 |
aataatgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggaggttacatattcatttgc |
15018004 |
T |
|
| Q |
218 |
acattgatttgtgaaggcttattatggctagacgttacatttccacaaacacc |
270 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
15018005 |
acattgatttgtgaaggctaattatttctagacgttacaattccacaaacacc |
15018057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 15019445 - 15019697
Alignment:
| Q |
18 |
ttttcatatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15019445 |
ttttcatatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattac |
15019544 |
T |
|
| Q |
118 |
aataatgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggaggttacatattcatttgc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15019545 |
aataatgttttggtggctgattaatgcaaatgaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggaggttacatattcatttgc |
15019644 |
T |
|
| Q |
218 |
acattgatttgtgaaggcttattatggctagacgttacatttccacaaacacc |
270 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
15019645 |
acattgatttgtgaaggctaattatttctagacgttacaattccacaaacacc |
15019697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 4 - 267
Target Start/End: Complemental strand, 9167188 - 9166926
Alignment:
| Q |
4 |
aaaattctacttccttttcatatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatg |
103 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9167188 |
aaaattcaacttc-ttttcatatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatc |
9167090 |
T |
|
| Q |
104 |
caaccactaattacaataatgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggaggtt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9167089 |
caaccactaattacaataatgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggaggtt |
9166990 |
T |
|
| Q |
204 |
acatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaac |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||| |
|
|
| T |
9166989 |
acatattcatttgcacattgatttgtgaaggctaattatttctagacgttacaattccacaaac |
9166926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 276
Target Start/End: Original strand, 39488298 - 39488570
Alignment:
| Q |
4 |
aaaattctacttccttttcatatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatg |
103 |
Q |
| |
|
||||||| |||| |||||||| |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39488298 |
aaaattccacttttttttcataacattttcgtgctctatctatatgagcatattacatgttgattttgactctaaaactcttagaaaatgaaaggaaatg |
39488397 |
T |
|
| Q |
104 |
caaccactaattacaataatgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggaggtt |
203 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39488398 |
cagccactaattacaataatgttttggtggctgattaatgcaaataagaggttacaaaatgactctctaagttggtggctaatcaatgcatgaggaggtt |
39488497 |
T |
|
| Q |
204 |
acatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacaccaccttt |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||| || |||||||||||||||| |
|
|
| T |
39488498 |
acatattcatttgcacattgatttgtgaagacttattatttctagacgttacaatttcacaaacaccaccttt |
39488570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 32 - 276
Target Start/End: Original strand, 13518136 - 13518380
Alignment:
| Q |
32 |
tcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaataatgttttggt |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
13518136 |
tcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataattttttggt |
13518235 |
T |
|
| Q |
132 |
ggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtga |
231 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
13518236 |
ggctgattaatgcaaataaaaggttacaaaatgactctctaagttggtggctaataaatgcatgaggaggttacatattcatttgcacattgatttgtaa |
13518335 |
T |
|
| Q |
232 |
aggcttattatggctagacgttacatttccacaaacaccaccttt |
276 |
Q |
| |
|
||||| ||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
13518336 |
aggctaattatttctagacgttacaattccacaaacaccaccttt |
13518380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 23 - 170
Target Start/End: Complemental strand, 19458146 - 19457999
Alignment:
| Q |
23 |
atatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaataa |
122 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| || | ||||||||| |||||| |
|
|
| T |
19458146 |
atatcattttcatgctctatttatatgagcctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattccaataa |
19458047 |
T |
|
| Q |
123 |
tgttttggtggctgattaatgcaaataaaatgttacaaaatgactctc |
170 |
Q |
| |
|
|||||| ||||||||||| |||||| |||| |||||||||||| |||| |
|
|
| T |
19458046 |
tgttttagtggctgattagtgcaaagaaaaggttacaaaatgaatctc |
19457999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 19459848 - 19459700
Alignment:
| Q |
22 |
catatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaata |
121 |
Q |
| |
|
|||||||||||||||| |||||||||||| | ||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
19459848 |
catatcattttcgtgcactatttatatgaacatattacatgattattttgattctaaaactcttagaaaatgaaaggaaatgcatccattaattgcaata |
19459749 |
T |
|
| Q |
122 |
atgttttggtggctgattaatgcaaataaaatgttacaaaatgactctc |
170 |
Q |
| |
|
|||||||||||| | |||| |||||| |||| |||| |||| ||||||| |
|
|
| T |
19459748 |
atgttttggtggttaattagtgcaaagaaaaggttataaaacgactctc |
19459700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 58 - 217
Target Start/End: Original strand, 19460552 - 19460708
Alignment:
| Q |
58 |
acatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaataatgttttggtggctgattaatgcaaataaaatgtta |
157 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||| |||| ||| |
|
|
| T |
19460552 |
acatgatgattttgattctaaaactctttgaaaatgaaatgaaatgcagccactaattacaataatgttttggtggttgattaatgcaaaaaaaa--tta |
19460649 |
T |
|
| Q |
158 |
caaaatgactctctaagttggtggctaatcaatgcatgaggaggttacatattcatttgc |
217 |
Q |
| |
|
||||||||||||| ||| | | | | |||||||||||| ||||||||| |||||||||| |
|
|
| T |
19460650 |
caaaatgactctccaaggtag-gcttcatcaatgcatgaagaggttacacattcatttgc |
19460708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 19456438 - 19456246
Alignment:
| Q |
22 |
catatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaata |
121 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| || |||||| |||||||||||||| ||||||||||||||||| | ||||||| ||||| |
|
|
| T |
19456438 |
catatcattgtcgtgctctatttatatgagcttatta---tataattttggttctaaaactcttag-aaatgaaaggaaatgcatctactaattgcaata |
19456343 |
T |
|
| Q |
122 |
atgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaa-gttggtggc-taatcaatgcatgaggaggttacatattcatttgc |
217 |
Q |
| |
|
||||||||| | ||||||| |||||| ||||||||||| |||||||||| || || |||||| | ||||||||||| ||||||||| |||||||||| |
|
|
| T |
19456342 |
atgttttgg-gactgattagtgcaaagaaaatgttacataatgactctccaaggtgggtggcttcatcaatgcatggagaggttacacattcatttgc |
19456246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 9398935 - 9399039
Alignment:
| Q |
172 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
271 |
Q |
| |
|
||||| |||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
9398935 |
aagttagtggctgatcaatgcatgagaaggttacatattcatttgcacatttatttgtgaaggcttattatgtctagacgttacaattccacaaacaccg |
9399034 |
T |
|
| Q |
272 |
ccttt |
276 |
Q |
| |
|
||||| |
|
|
| T |
9399035 |
ccttt |
9399039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 24663583 - 24663664
Alignment:
| Q |
24 |
tatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgca |
105 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
24663583 |
tatcattttcgtgctctatttatatgattttattacatgatgattttgattctaaaactcttagaaaataaaaggaaatgca |
24663664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 22474214 - 22474101
Alignment:
| Q |
22 |
catatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaata |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| ||| || | | ||| ||||||| ||||||| |||||||||||||||| |||||| | | |
|
|
| T |
22474214 |
catatcattttcgtgctctatttatatgaactcattacaagatagttctaattctgaaactctaagaaaataaaaggaaatgcaaccattaattatcaca |
22474115 |
T |
|
| Q |
122 |
atgttttggtggct |
135 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
22474114 |
atgttttggtggct |
22474101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 21484620 - 21484699
Alignment:
| Q |
22 |
catatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaa |
101 |
Q |
| |
|
||||||||||| || | |||||||||| | |||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
21484620 |
catatcatttttgtattgtatttatatgcgtttattacatgatgattttgattctaaaactcttacaaaatgaaaggaaa |
21484699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 36233825 - 36233575
Alignment:
| Q |
20 |
ttcatatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36233825 |
ttcatatcattttcgtgctctatttatatgagcttattacatgatgattttcactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaa |
36233726 |
T |
|
| Q |
120 |
taatgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggaggttacatattcatttgcac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36233725 |
taatgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggaggttacatattcatttgcac |
36233626 |
T |
|
| Q |
220 |
attgatttgtgaaggcttattatggctagacgttacatttccacaaacacc |
270 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
36233625 |
attgatttgtgaaggctaattatttctagacgttacaattccacaaacacc |
36233575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 4 - 276
Target Start/End: Original strand, 24157204 - 24157473
Alignment:
| Q |
4 |
aaaattctacttccttttcatatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatg |
103 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24157204 |
aaaattctactt--tttacatatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaagcaaatg |
24157301 |
T |
|
| Q |
104 |
caaccactaattacaataatgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggaggtt |
203 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24157302 |
cagccactaattacaataatgttttggtggctgattaatgcaaataaaaggttacaaaatgactctctaagttggtggctaatcaatgcatgaggaggtt |
24157401 |
T |
|
| Q |
204 |
acatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacaccaccttt |
276 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
24157402 |
acatattcatttgca-attgatttgtgaaggcttattatttctagacgttacaattccacaaacaccaccttt |
24157473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 22 - 276
Target Start/End: Original strand, 20190596 - 20190850
Alignment:
| Q |
22 |
catatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaata |
121 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20190596 |
catatcattttcgtgatctatttatatgaggttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaata |
20190695 |
T |
|
| Q |
122 |
atgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggaggttacatattcatttgcacat |
221 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20190696 |
atgatttggtggctgattaatgcaaataaaagattacaaaatgactctctaagttggtggctaatcaatgcatgaggaggttacatattcatttgcacat |
20190795 |
T |
|
| Q |
222 |
tgatttgtgaaggcttattatggctagacgttacatttccacaaacaccaccttt |
276 |
Q |
| |
|
||||||||||||||||||||| | |||||||||| ||||||||||||||||||| |
|
|
| T |
20190796 |
tgatttgtgaaggcttattatttcaagacgttacaattccacaaacaccaccttt |
20190850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 101 - 276
Target Start/End: Original strand, 20189042 - 20189217
Alignment:
| Q |
101 |
atgcaaccactaattacaataatgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20189042 |
atgcaaccactaattacaataatgttttggtggctgattaatgcaaataaaaggttacaaaatgactctctaagttggtggctaatcaatgcatgaggag |
20189141 |
T |
|
| Q |
201 |
gttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacaccaccttt |
276 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
20189142 |
gttatatattcatttgcacattgatttgtgaaggcttattatttctagacgttacaattccacaaacaccaccttt |
20189217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 276
Target Start/End: Complemental strand, 20759464 - 20759360
Alignment:
| Q |
172 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
271 |
Q |
| |
|
|||||||| ||| ||||||||||||||| |||||||||||||||||||||||||| | ||||||| |||| |||| |||||| |||||||||||||| |
|
|
| T |
20759464 |
aagttggtcgctgatcaatgcatgaggatgttacatattcatttgcacattgattaatcaaggcttgttatttatagatgttacaattccacaaacacca |
20759365 |
T |
|
| Q |
272 |
ccttt |
276 |
Q |
| |
|
|||| |
|
|
| T |
20759364 |
tcttt |
20759360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 31390299 - 31390245
Alignment:
| Q |
172 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatt |
226 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31390299 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatt |
31390245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 8366645 - 8366371
Alignment:
| Q |
1 |
atcaaaattctacttccttttcatatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaa |
100 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
8366645 |
atcaaaattctacttg-tttacatatcattttcgtgctctatttatatgagcttattacatgaggactttgactctaaaactcttagaaaatgaaaggaa |
8366547 |
T |
|
| Q |
101 |
atgcaaccactaattacaataatgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggag |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8366546 |
atgcagccactaattacaataatgttttggtggctgattaatgcaaataagaggttacaaaatgactctctaagttggtggctaatcaatgcatgaggag |
8366447 |
T |
|
| Q |
201 |
gttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacaccaccttt |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
8366446 |
gttacatattcatttgcacattgatttgtgaaggcttattatttctagacgttacaattccacaaacaccaccttt |
8366371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 17277991 - 17278095
Alignment:
| Q |
172 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
271 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
17277991 |
aagttggtggctgatcaatgcatgagaaggttacatattcattttcacattgatttgtgaaggcttattatgtctagacgttacaattccacaaacacca |
17278090 |
T |
|
| Q |
272 |
ccttt |
276 |
Q |
| |
|
||||| |
|
|
| T |
17278091 |
ccttt |
17278095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 7843214 - 7842940
Alignment:
| Q |
1 |
atcaaaattctacttccttttcatatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaa |
100 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7843214 |
atcaaaattctacttc-tttacataccattttcgtgctctatttatatgagcttattacatgatgattttgactcaaaaactcttagaaaatgaaaggaa |
7843116 |
T |
|
| Q |
101 |
atgcaaccactaattacaataatgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggag |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7843115 |
atgcagccactaattacaataatgttttggtggctgattaatgcaaataaaaggttacaaaatgactctctaagttggtggctaatcaatgcatgaagag |
7843016 |
T |
|
| Q |
201 |
gttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacaccaccttt |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
7843015 |
gttacatattcatttgcacattgatttgtgaaggcttattatttctagacgttacaattccacaaacacctccttt |
7842940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 4 - 276
Target Start/End: Original strand, 9595585 - 9595856
Alignment:
| Q |
4 |
aaaattctacttccttttcatatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatg |
103 |
Q |
| |
|
||||||| ||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9595585 |
aaaattcaacttc-tttacatatcattttcgtgctctatttatatgagtttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatg |
9595683 |
T |
|
| Q |
104 |
caaccactaattacaataatgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggaggtt |
203 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9595684 |
cagccactaattacaataatgttttggtggctgattaattcaaataaaagtttacaaaatgactctctaagttggtggctaatcaatgcatgaggtggtt |
9595783 |
T |
|
| Q |
204 |
acatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacaccaccttt |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
9595784 |
acatattcatttgcacattgatttgtgaaggcttattatttctagacgttacaattccacaaacacctccttt |
9595856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 276
Target Start/End: Original strand, 9646548 - 9646819
Alignment:
| Q |
4 |
aaaattctacttccttttcatatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatg |
103 |
Q |
| |
|
||||||| ||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9646548 |
aaaattcaacttc-tttacatatcattttcgtgctctatttatatgagtttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatg |
9646646 |
T |
|
| Q |
104 |
caaccactaattacaataatgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggaggtt |
203 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9646647 |
cagccactaattacaataatgttttggtggctgattaattcaaataaaagtttacaaaatgactctctaagttggtggctaatcaatgcatgaggtggtt |
9646746 |
T |
|
| Q |
204 |
acatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacaccaccttt |
276 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
9646747 |
acatattcatttggacattgatttgtgaaggcttattatttctagacgttacaattccacaaacacctccttt |
9646819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 32 - 276
Target Start/End: Original strand, 9647111 - 9647355
Alignment:
| Q |
32 |
tcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaataatgttttggt |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
9647111 |
tcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataattttttggt |
9647210 |
T |
|
| Q |
132 |
ggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtga |
231 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9647211 |
ggctgattaatgcaaataaaaggttacaaaatgactctctaagttggtggctaataaatgcatgaggaggttacatattcatttgcacattgatttgtaa |
9647310 |
T |
|
| Q |
232 |
aggcttattatggctagacgttacatttccacaaacaccaccttt |
276 |
Q |
| |
|
||||| ||||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
9647311 |
aggctgattatttctagacgttacaattccacaaacacctccttt |
9647355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 40998535 - 40998639
Alignment:
| Q |
172 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
271 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
40998535 |
aagttggtggctgatcaatgcatgaaaaggttacatattcatttgcacattgatttgtgaaggattattatggctagacgttacaattccataaacacca |
40998634 |
T |
|
| Q |
272 |
ccttt |
276 |
Q |
| |
|
||||| |
|
|
| T |
40998635 |
ccttt |
40998639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 41000394 - 41000498
Alignment:
| Q |
172 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
271 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
41000394 |
aagttggtggctgatcaatgcatgaaaaggttacatattcatttgcacattgatttgtgaaggattattatggctagacgttacaattccataaacacca |
41000493 |
T |
|
| Q |
272 |
ccttt |
276 |
Q |
| |
|
||||| |
|
|
| T |
41000494 |
ccttt |
41000498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 9596148 - 9596216
Alignment:
| Q |
32 |
tcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9596148 |
tcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaa |
9596216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 22300042 - 22300316
Alignment:
| Q |
1 |
atcaaaattctacttccttttcatatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaa |
100 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22300042 |
atcaaaattctacttg-tttacatatcattttcgtgctctatttatatgagcttattacatgatgactttgactctaaaactcttagaaaatgaaaggaa |
22300140 |
T |
|
| Q |
101 |
atgcaaccactaattacaataatgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggag |
200 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22300141 |
atgcagccattaattacaataatgttttggtggctgattaatgcaaataagaggttacaaaatgactctctaagttggtggctaatcaatgcatgaggag |
22300240 |
T |
|
| Q |
201 |
gttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacaccaccttt |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
22300241 |
gttacatattcatttgcacattgatttgtgaaggcttattatttctagacgttacaattccacaaacaccaccttt |
22300316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 18535618 - 18535722
Alignment:
| Q |
172 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
271 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18535618 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaatgcttattatggctagacgttacatttccacaaacacca |
18535717 |
T |
|
| Q |
272 |
ccttt |
276 |
Q |
| |
|
||||| |
|
|
| T |
18535718 |
ccttt |
18535722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 24806599 - 24806704
Alignment:
| Q |
172 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatgg-ctagacgttacatttccacaaacacc |
270 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
24806599 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttttgaaggcttattatggcctagacgttacaattccacaaacacc |
24806698 |
T |
|
| Q |
271 |
accttt |
276 |
Q |
| |
|
|||||| |
|
|
| T |
24806699 |
accttt |
24806704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 24808455 - 24808560
Alignment:
| Q |
172 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatgg-ctagacgttacatttccacaaacacc |
270 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||| ||||||||||||| |
|
|
| T |
24808455 |
aagttggtggcggatcaatgcatgagaaggttacatattcatttgcacattgatttttgaaggcttattatggcctagccgttacaattccacaaacacc |
24808554 |
T |
|
| Q |
271 |
accttt |
276 |
Q |
| |
|
|||||| |
|
|
| T |
24808555 |
accttt |
24808560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0269 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0269
Description:
Target: scaffold0269; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 28 - 276
Target Start/End: Original strand, 1575 - 1823
Alignment:
| Q |
28 |
attttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaataatgttt |
127 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
1575 |
attttcgtgctatatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcagccattaattacaataatgttt |
1674 |
T |
|
| Q |
128 |
tggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgattt |
227 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1675 |
tggtggctgattaatgcaaataagaggttacaaaatgactctctaagttagtggctaatcaatgcatgaggaggttacatattcatttgcacattgattt |
1774 |
T |
|
| Q |
228 |
gtgaaggcttattatggctagacgttacatttccacaaacaccaccttt |
276 |
Q |
| |
|
||||| ||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
1775 |
gtgaaagcttattatttctagacgttacaattccacaaacaccaccttt |
1823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 99 - 276
Target Start/End: Complemental strand, 25532077 - 25531900
Alignment:
| Q |
99 |
aaatgcaaccactaattacaataatgttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatgagg |
198 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25532077 |
aaatgcagccactaattacaataatgttttggtggctgattaatgcaaataagaggttacaaaatgactctctaagttggtggctaatcaatgcatgagg |
25531978 |
T |
|
| Q |
199 |
aggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacaccaccttt |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
25531977 |
aggttacatattcatttgcacattgatttgtgaaggcttattatttctagacgttacaattccacaaacaccaccttt |
25531900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 172 - 276
Target Start/End: Complemental strand, 16347002 - 16346898
Alignment:
| Q |
172 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
271 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16347002 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaatgcttattatggctagacgttacatttccacaaacacca |
16346903 |
T |
|
| Q |
272 |
ccttt |
276 |
Q |
| |
|
||||| |
|
|
| T |
16346902 |
ccttt |
16346898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 47418292 - 47418396
Alignment:
| Q |
172 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
271 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47418292 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaatgcttattatggctagacgttacatttccacaaacacca |
47418391 |
T |
|
| Q |
272 |
ccttt |
276 |
Q |
| |
|
||||| |
|
|
| T |
47418392 |
ccttt |
47418396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 5554107 - 5554211
Alignment:
| Q |
172 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
271 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5554107 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttacacattgatttgtgaaggcttattatggctagacgttacaattccacaaacacca |
5554206 |
T |
|
| Q |
272 |
ccttt |
276 |
Q |
| |
|
||||| |
|
|
| T |
5554207 |
ccttt |
5554211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 172 - 276
Target Start/End: Complemental strand, 23460570 - 23460466
Alignment:
| Q |
172 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
271 |
Q |
| |
|
|||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23460570 |
aagttggtggttgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccacaaacacca |
23460471 |
T |
|
| Q |
272 |
ccttt |
276 |
Q |
| |
|
||||| |
|
|
| T |
23460470 |
ccttt |
23460466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 176 - 272
Target Start/End: Complemental strand, 47566839 - 47566743
Alignment:
| Q |
176 |
tggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacaccac |
272 |
Q |
| |
|
|||||| | |||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
47566839 |
tggtggttgatcaatgcttgagaaggttacatattcatttgcacattgatttgtgaaagcttattatttctagaaattacaattccacaaacaccac |
47566743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 2693903 - 2693788
Alignment:
| Q |
19 |
tttcatatcattttcgtgctctatttatatgagcttattacatgatga---ttttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaatt |
115 |
Q |
| |
|
|||||||||||||||||| || ||||| || ||||| ||||||||| |||||| ||| ||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
2693903 |
tttcatatcattttcgtgtcctctttatgtgggcttagtacatgatgcaggttttgattctgaaactcttagaaaataaaagtaaatgcaaccactaatt |
2693804 |
T |
|
| Q |
116 |
acaataatgttttggt |
131 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
2693803 |
gcaattatgttttggt |
2693788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 2683989 - 2683933
Alignment:
| Q |
78 |
aaactcttagaaaatgaaaggaaatgcaaccactaattacaataatgttttggtggctga |
137 |
Q |
| |
|
|||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||||| |
|
|
| T |
2683989 |
aaactcttagaaaatgaacggaaatgcagc---taatttcaataatgttttggtggctga |
2683933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 172 - 276
Target Start/End: Complemental strand, 55225 - 55121
Alignment:
| Q |
172 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
271 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
55225 |
aagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccacaaacacca |
55126 |
T |
|
| Q |
272 |
ccttt |
276 |
Q |
| |
|
||||| |
|
|
| T |
55125 |
ccttt |
55121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 172 - 276
Target Start/End: Complemental strand, 241414 - 241310
Alignment:
| Q |
172 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacacca |
271 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
241414 |
aagttggtggctgatcaatgcatgagaaggttatatattcatttgcacattgatttttgaaggcttattatgtctagacgttacaattccacaaacacca |
241315 |
T |
|
| Q |
272 |
ccttt |
276 |
Q |
| |
|
||||| |
|
|
| T |
241314 |
ccttt |
241310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 399 - 504
Alignment:
| Q |
172 |
aagttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatgg-ctagacgttacatttccacaaacacc |
270 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||| ||||||||||||| |
|
|
| T |
399 |
aagttggtggcggatcaatgcatgagaaggttacatattcatttgcacattgatttttgaaggcttattatggcctagccgttacaattccacaaacacc |
498 |
T |
|
| Q |
271 |
accttt |
276 |
Q |
| |
|
|||||| |
|
|
| T |
499 |
accttt |
504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 178 - 276
Target Start/End: Complemental strand, 86941 - 86843
Alignment:
| Q |
178 |
gtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacatttccacaaacaccaccttt |
276 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
86941 |
gtggctaatcaatggatgaggaggttacatattgattttcacattgatttgtgaaggcttattatttatagacgttacaattccacaaacaccaccttt |
86843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0146
Description:
Target: scaffold0146; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 27520 - 27480
Alignment:
| Q |
172 |
aagttggtggctaatcaatgcatgaggaggttacatattca |
212 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
27520 |
aagttggtggctgatcaatgcatgagaaggttacatattca |
27480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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