View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15873_low_26 (Length: 285)
Name: NF15873_low_26
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15873_low_26 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 100 - 274
Target Start/End: Original strand, 4435413 - 4435587
Alignment:
| Q |
100 |
tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattcatctcgcatcaaatccaga |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4435413 |
tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagtgaacatattcatattcatctcgcatcaaatccaga |
4435512 |
T |
|
| Q |
200 |
tctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaacattgattttgctgacctaatttcat |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4435513 |
tctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaatacattgattttgctgacctaatttcat |
4435587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 100 - 274
Target Start/End: Complemental strand, 46595425 - 46595251
Alignment:
| Q |
100 |
tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattcatctcgcatcaaatccaga |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46595425 |
tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagtgaacatattcatattcatctcgcatcaaatccaga |
46595326 |
T |
|
| Q |
200 |
tctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaacattgattttgctgacctaatttcat |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46595325 |
tctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaatacattgattttgctgacctaatttcat |
46595251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 100 - 274
Target Start/End: Complemental strand, 37719666 - 37719493
Alignment:
| Q |
100 |
tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattcatctcgcatcaaatccaga |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37719666 |
tcatcctcatcgactcaagctccggccatcttccataaaccaccacgagaccgtgagtcgagagtgaacatattcatattcatctcgcatcaaatccaga |
37719567 |
T |
|
| Q |
200 |
tctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaacattgattttgctgacctaatttcat |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37719566 |
tctcgaaatcctctgcatctcgatctgttggttttaa-ccatgaaaaaacattgattttgctgacctaatttcat |
37719493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 100 - 270
Target Start/End: Complemental strand, 30440879 - 30440715
Alignment:
| Q |
100 |
tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattcatctcgcatcaaatccaga |
199 |
Q |
| |
|
||||| |||| | ||| |||||| |||||||| ||||||||||||| |||| ||||||||||| ||||||||||||| ||| ||||||||||||| |
|
|
| T |
30440879 |
tcatcgtcattgcctctagctccagccaccttacgtaaaccaccacaagactgtgagttgagaatgaacatattcat------ctcacatcaaatccaga |
30440786 |
T |
|
| Q |
200 |
tctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaacattgattttgctgacctaatt |
270 |
Q |
| |
|
|||| ||||||||| ||||| ||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30440785 |
tctcaaaatcctctacatctagatttgttggttttaacccatgaaaattcattgattttgctgacctaatt |
30440715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 100 - 270
Target Start/End: Complemental strand, 16961298 - 16961128
Alignment:
| Q |
100 |
tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattcatctcgcatcaaatccaga |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16961298 |
tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccatgagtcgagagtgaacatattcatattcatctcgcatcaaatccaga |
16961199 |
T |
|
| Q |
200 |
tctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaacattgattttgctgacctaatt |
270 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16961198 |
tctcaaaatcctctgcatctcgatttgttggttttaacccatgaaaaaacattgattttgctgacctaatt |
16961128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 100 - 270
Target Start/End: Original strand, 25868611 - 25868781
Alignment:
| Q |
100 |
tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattcatctcgcatcaaatccaga |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25868611 |
tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagagaacatattcatattcatctcgcatcaaatccaga |
25868710 |
T |
|
| Q |
200 |
tctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaacattgattttgctgacctaatt |
270 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25868711 |
tctcgaaatcctctgcatctcaatatgttggttttaacccatgaaaaaacattgattttgctgacctaatt |
25868781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 38016650 - 38016561
Alignment:
| Q |
181 |
atctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaacattgattttgctgacctaatt |
270 |
Q |
| |
|
||||| |||||||| ||||||| ||||| ||||||||| ||||||||||||| ||||||| |||| |||||||||||||| |||||||| |
|
|
| T |
38016650 |
atctcacatcaaattcagatcttaaaatcatctgcatcttgatctgttggtttcaacccattaaaatacattgattttgctcacctaatt |
38016561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 27277334 - 27277282
Alignment:
| Q |
181 |
atctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttt |
233 |
Q |
| |
|
||||| ||||||||| ||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
27277334 |
atctcacatcaaatctggatatcgaattcatctgcatctcgatctgttggttt |
27277282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 81823 - 81770
Alignment:
| Q |
199 |
atctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaacatt |
252 |
Q |
| |
|
|||| |||||| ||| ||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
81823 |
atcttgaaatcatctacatctcgatctgttggtttcaacccatgaaaacacatt |
81770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 43045887 - 43045835
Alignment:
| Q |
181 |
atctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttt |
233 |
Q |
| |
|
||||||||||||||| ||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
43045887 |
atctcgcatcaaatctggatatcgatatcatctgcatctcgatctgttggttt |
43045835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University