View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15873_low_27 (Length: 282)
Name: NF15873_low_27
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15873_low_27 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-150; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 47582758 - 47582487
Alignment:
| Q |
11 |
cacagaaagtagaaacataacacctagcagaaacttttttcacgaaaagctaacaccctctcctaattgataaaatattgatgaactaattatattttca |
110 |
Q |
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| T |
47582758 |
cacagaaagtagaaacataacatctagcagaaacttttttcacgaaaagctaacaccctctcctaattgataaaatattgatgaactaattatattttca |
47582659 |
T |
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| Q |
111 |
ttagagggacaggaaaagattattggtgatttcaattcttgttctcccaagttcttacagaagatatatcttttgctagatatagtaatcatgggttgac |
210 |
Q |
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| T |
47582658 |
ttagagggacaggaaaagattattggtgatttcaattcttgttctcccaagttcttacagaagatatatcttttgctagatatagtaatcatgggttgac |
47582559 |
T |
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| Q |
211 |
agtaatatatggtatgattacattgatgtcttattatgtcagaaatggtcgtaaaattaaaaaagtgtaaat |
282 |
Q |
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| T |
47582558 |
agtaatatatggtatgattacattgatgtcttattatgtcagaaatggtcgtaaaattaaaaaagtgtaaat |
47582487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 47570847 - 47570697
Alignment:
| Q |
81 |
taaaatattgatgaactaattatattttcattagagggacaggaaaagattattggtgatttcaattcttgttctc------ccaagttcttacagaag- |
173 |
Q |
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| T |
47570847 |
taaaatattgtttaactatttat-ttttcattagagggataggaaaagattattggtgatttcagttcacgttctcaatgtaccaagttattgcagaaga |
47570749 |
T |
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| Q |
174 |
-atatatcttttgctagatatagtaatcatgggttgacagtaatatatggta |
224 |
Q |
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| T |
47570748 |
tatatatctcttgctagatatagtatccatgggttgacagtgatatatggta |
47570697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 47572901 - 47572862
Alignment:
| Q |
183 |
ttgctagatatagtaatcatgggttgacagtaatatatgg |
222 |
Q |
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| T |
47572901 |
ttgctagatatagtagtcatgggttgacagtaatatatgg |
47572862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 47573269 - 47573217
Alignment:
| Q |
56 |
aaagctaacaccctctcctaattgataaaatattgatgaactaattatattttc |
109 |
Q |
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| T |
47573269 |
aaagctaa-accctctcctagttcttaaaatattgatgaactacttatattttc |
47573217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 47566304 - 47566249
Alignment:
| Q |
81 |
taaaatattgatgaactaattatattttcattagagggacaggaaaagattattggt |
137 |
Q |
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| T |
47566304 |
taaaatattgattaactatttat-ttttcatttgagggataagaaaagattattggt |
47566249 |
T |
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