View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15873_low_3 (Length: 613)
Name: NF15873_low_3
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15873_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 13 - 594
Target Start/End: Original strand, 40235151 - 40235732
Alignment:
| Q |
13 |
agcagagatgggtgagatgaagtcagcgttgttggtactctcgcaacagatgcaacaacagagtgttacaatgcaacaacagagcgctgtgttgagtgaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40235151 |
agcagagatgggtgagatgaagtcagcgttgttggtactctcgcaacagatgcaacaacagagtgttacaatgcaacaacagagcgctgtgttgagtgaa |
40235250 |
T |
|
| Q |
113 |
ttaagcaaacagctagagaagcgaccatcaccggagtttactcagacgagtgaatcttccgccaaccaatttcaggaatcgcgactttccagaaagaagg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40235251 |
ttaagcaaacagctagagaagcgaccatcaccggagtttactcagacgagtgaatcttccgccaaccaatttcaggaatcgcgactttccggaaagaagg |
40235350 |
T |
|
| Q |
213 |
ttaagttgccggtgtttgaaggagacgatcatgtaggatggattactagagctgagatctactttgacgtacagaagacgtcggaggagatgcgcgtaaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40235351 |
ttaagttgccggtgtttgaaggagacgatcctgtaggatggattactagagctgagatctactttgacgtacagaagacgtcggaggagatgcgcgtaaa |
40235450 |
T |
|
| Q |
313 |
actcgcacgccttagcatggaaggaacaacaattcgttggtttaatctgttgatggaaacagaggatgaattatcttgggagaaattgaagaaagcgctg |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40235451 |
actcgcacgccttagcatggaaggaacaacaattcattggtttaatctgttgatggaaacagaggatgaattatcttgggagaaattgaagaaagcgctg |
40235550 |
T |
|
| Q |
413 |
atcgctcgttatggtggtcgtcgattagagaatccgttcgaagaattgtccaccttacgtcagaaaagaggcgtggaagagtatgtaaaagcgtttgagt |
512 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40235551 |
atcgctcgttatggtggtcgtcaattagagaatccgttcgaagaattgtccaccttacgtcagaaaagaggcgtggaagagtatgtggaagcgtttgagt |
40235650 |
T |
|
| Q |
513 |
tactctcttctcaggtggggaagcttcctgaagaacagtatttgggatacttcatgagtgggttacaaccccagatccggag |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40235651 |
tactctcttctcaggtggggaagcttcctgaagaacagtatttgggatacttcatgagtgggttacaaccccagatccggag |
40235732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 558; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 13 - 594
Target Start/End: Complemental strand, 46440429 - 46439848
Alignment:
| Q |
13 |
agcagagatgggtgagatgaagtcagcgttgttggtactctcgcaacagatgcaacaacagagtgttacaatgcaacaacagagcgctgtgttgagtgaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46440429 |
agcagagatgggtgagatgaagtcagcgttgttggtactctcgcaacagatgcaacaacagagtgttacaatgcaacaacagagcgctgtgttgagtgaa |
46440330 |
T |
|
| Q |
113 |
ttaagcaaacagctagagaagcgaccatcaccggagtttactcagacgagtgaatcttccgccaaccaatttcaggaatcgcgactttccagaaagaagg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
46440329 |
ttaagcaaacagctagagaagcgaccatcaccggagtttactcagacgagtgaatcttccgccaaccaatttcaggaatcgcgactttccggaaagaagg |
46440230 |
T |
|
| Q |
213 |
ttaagttgccggtgtttgaaggagacgatcatgtaggatggattactagagctgagatctactttgacgtacagaagacgtcggaggagatgcgcgtaaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46440229 |
ttaagttgccggtgtttgaaggagacgatcctgtaggatggattactagagctgagatctactttgacgtacagaagacgtcggaggagatgcgcgtaaa |
46440130 |
T |
|
| Q |
313 |
actcgcacgccttagcatggaaggaacaacaattcgttggtttaatctgttgatggaaacagaggatgaattatcttgggagaaattgaagaaagcgctg |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46440129 |
actcgcacgccttagcatggaaggaacaacaattcattggtttaatctgttgatggaaacagaggatgaattatcttgggagaaattgaagaaagcgctg |
46440030 |
T |
|
| Q |
413 |
atcgctcgttatggtggtcgtcgattagagaatccgttcgaagaattgtccaccttacgtcagaaaagaggcgtggaagagtatgtaaaagcgtttgagt |
512 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
46440029 |
atcgctcgttatggtggtcgtcaattagagaatccgttcgaagaattgtccaccttacgtcagaaaagaggcgtggaagagtatgtggaagcgtttgagt |
46439930 |
T |
|
| Q |
513 |
tactctcttctcaggtggggaagcttcctgaagaacagtatttgggatacttcatgagtgggttacaaccccagatccggag |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46439929 |
tactctcttctcaggtggggaagcttcctgaagaacagtatttgggatacttcatgagtgggttacaaccccagatccggag |
46439848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 459
Target Start/End: Original strand, 16355719 - 16355813
Alignment:
| Q |
365 |
atggaaacagaggatgaattatcttgggagaaattgaagaaagcgctgatcgctcgttatggtggtcgtcgattagagaatccgttcgaagaatt |
459 |
Q |
| |
|
|||||||||||||| || |||| |||||||||||||||| ||| ||||||||||||| | ||||| || | |||||||| ||||||||||| |
|
|
| T |
16355719 |
atggaaacagaggacgatctatccagggagaaattgaagaaggcgttgatcgctcgttacgacggtcgaagactggagaatccattcgaagaatt |
16355813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 326 - 591
Target Start/End: Complemental strand, 28514921 - 28514656
Alignment:
| Q |
326 |
agcatggaaggaacaacaattcgttggtttaatctgttgatggaaacagaggatgaattatcttgggagaaattgaagaaagcgctgatcgctcgttatg |
425 |
Q |
| |
|
|||||||| || |||| |||| |||||| ||||| ||||||||||||||||||| | | || ||||||||| ||||| ||||| || |||||||| | |
|
|
| T |
28514921 |
agcatggagggttcaaccattcattggttcaatcttttgatggaaacagaggatgcactctcatgggagaaactgaagcgcgcgctaattgctcgttacg |
28514822 |
T |
|
| Q |
426 |
gtggtcgtcgattagagaatccgttcgaagaattgtccaccttacgtcagaaaagaggcgtggaagagtatgtaaaagcgtttgagttactctcttctca |
525 |
Q |
| |
|
| || | || |||||||| |||||||| ||| | ||||| |||||||||| | | || ||||||| ||| |||| || || ||| | || ||||| |
|
|
| T |
28514821 |
gcggaaggcgcttagagaacccgttcgaggaactatccactctacgtcagaaggggagtgtagaagagtttgttgaagctttcgaattattgtcatctca |
28514722 |
T |
|
| Q |
526 |
ggtggggaagcttcctgaagaacagtatttgggatacttcatgagtgggttacaaccccagatccg |
591 |
Q |
| |
|
||||||| |||||| || ||||| ||||||||||||||||||||||| ||| |||| |||||||| |
|
|
| T |
28514721 |
agtggggaggcttccagaggaacaatatttgggatacttcatgagtggattaaaaccacagatccg |
28514656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University