View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15873_low_34 (Length: 237)
Name: NF15873_low_34
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15873_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 7745243 - 7745021
Alignment:
| Q |
1 |
aaattgaaaatatacatttttt-agaagatattaattagcataaattttcagagattagatattgcaaagaaaagaagaagtttcatatgggtaaaggtt |
99 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
7745243 |
aaattgaaaatatacatttttttagaagatataaattagcataaattttcagagattagatattgcaaagaaaagaagaagcttcatatggataaaggtt |
7745144 |
T |
|
| Q |
100 |
tattttttattatttgttcaacaacagcaacaaaacctatagtgtaatgaaagtacagattgttctgataaaatctaaacggttaaattatataaacttt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7745143 |
tattttttattatttgttcaacaacagcaacaaaacctatagtgtaatgaaagtacagattgttctgataaaatctaaacggttaaattatataaatttt |
7745044 |
T |
|
| Q |
200 |
tgaaaggaaacaagcttgaatgt |
222 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
7745043 |
tgaaaggaaacaagcttgaatgt |
7745021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 12542843 - 12543062
Alignment:
| Q |
4 |
ttgaaaatatacatttt-ttagaagatattaattagcataaattttcagagattagatattgcaaagaaaagaagaagtttcatatgggtaaaggtttat |
102 |
Q |
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||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| |
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| T |
12542843 |
ttgaaaatataaatttttttagaagatataaattagcacaaattttcagagattagatattgcaaagaaaagaagaagcttcatatggataaatgtttat |
12542942 |
T |
|
| Q |
103 |
tttttattatttgttcaacaacagcaacaaaacctatagtgtaatgaaagtacagattgttctgataaaatctaaacggttaaattatataaacttttga |
202 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| |
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| T |
12542943 |
ttttcattatttgttcaacaacagcaacaaaacctttagtgtaatgaaagtacagattgttctgataaattctaaatggttaaattatataattttttga |
12543042 |
T |
|
| Q |
203 |
aaggaaacaagcttgaatgt |
222 |
Q |
| |
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|||||||||||||||||||| |
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| T |
12543043 |
aaggaaacaagcttgaatgt |
12543062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 27575210 - 27575092
Alignment:
| Q |
113 |
ttgttcaacaacagcaacaaaacctatagtgtaatgaaagtacagattgttctgataaaatc----------taaacggttaaattatataaacttttga |
202 |
Q |
| |
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||||||||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| | |||||| |
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| T |
27575210 |
ttgttcaacaaaagcaatgaaacctacagtgtaatgaaagtacaaattgttctgataaaatctaagttaatttaaagggttaaattatataga-ttttga |
27575112 |
T |
|
| Q |
203 |
aaggaaacaagcttgaatgt |
222 |
Q |
| |
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|||||||||||||||||||| |
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| T |
27575111 |
aaggaaacaagcttgaatgt |
27575092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 1081321 - 1081221
Alignment:
| Q |
1 |
aaattgaaaatataca-ttttttagaagatattaattagcataaattttcagagattagatattgcaaagaaaagaagaagtttcatatgggtaaaggtt |
99 |
Q |
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|
|||||||||||||||| ||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1081321 |
aaattgaaaatatacaattttttagaagatctaaattagcatcaattttcagagattagatattgcaaagaaaagaagaagtttcat-ggggtaaaggtt |
1081223 |
T |
|
| Q |
100 |
ta |
101 |
Q |
| |
|
|| |
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|
| T |
1081222 |
ta |
1081221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 24917895 - 24917795
Alignment:
| Q |
1 |
aaattgaaaatataca-ttttttagaagatattaattagcataaattttcagagattagatattgcaaagaaaagaagaagtttcatatgggtaaaggtt |
99 |
Q |
| |
|
||||||||||| |||| ||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24917895 |
aaattgaaaatgtacaattttttagaagatctaaattagcatcaattttcagagattagatattgcaaagaaaagaagaagtttcat-ggggtaaaggtt |
24917797 |
T |
|
| Q |
100 |
ta |
101 |
Q |
| |
|
|| |
|
|
| T |
24917796 |
ta |
24917795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 15339882 - 15339781
Alignment:
| Q |
1 |
aaattgaaaatataca--ttttttagaagatattaattagcataaattttcagagattagatattgcaaagaaaagaagaagtttcatatgggtaaaggt |
98 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15339882 |
aaattgaaaatatacaatttttttagaagatctaaattagcatcaattttcagagattagatattgcaaagaaaagaagaagtttcat-ggggtaaaggt |
15339784 |
T |
|
| Q |
99 |
tta |
101 |
Q |
| |
|
||| |
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|
| T |
15339783 |
tta |
15339781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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