View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15873_low_6 (Length: 539)
Name: NF15873_low_6
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15873_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 20 - 529
Target Start/End: Original strand, 15180145 - 15180654
Alignment:
| Q |
20 |
aacaacaaattacttcaacaaacaataggaatttactatgaagacataacatttagagatatcctctttgattcaagctaccgaggtggaggaatattca |
119 |
Q |
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| T |
15180145 |
aacaacaaattacttcaacaaacaataggaatttactatgaagacataacatttagagatatcctctttgattcaagctaccgaggtggaggaatattca |
15180244 |
T |
|
| Q |
120 |
tcgtcgattcagctagaatcagaatcgacaattgtttcttcctccatttcaacacagaaggaattaaagttcaaagtggccatgaaaccttcatatcaag |
219 |
Q |
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| T |
15180245 |
tcgtcgattcagctagaatcagaatcgacaattgtttcttcctccatttcaacacagaaggaattaaagttcaaagtggccatgaaaccttcatatcaag |
15180344 |
T |
|
| Q |
220 |
tagttttcttggacaacactcaacagtcggcggagacaaaggcgaaagacaattttcgggaactgcaattgatcttgctagcaacgacaatgctatcact |
319 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
15180345 |
tagttttcttggacaacactcaacagtcggtggagacaaaggcgaaagacaattttctggaactgcaattgatcttgctagcaatgacaatgctatcacc |
15180444 |
T |
|
| Q |
320 |
gatgtcgcaattttctcagcagccattggaattgttgttaggggacaagctaacataatcacaggtgtgcattgttataacaaagcaacaggttttggtg |
419 |
Q |
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| T |
15180445 |
gatgtcgcaattttctcagcagccattggaattgttgttaggggacaagctaacataatcacaggtgtgcattgttataacaaagcaacaggttttggtg |
15180544 |
T |
|
| Q |
420 |
gaattggaattttgttgaaattagctgggaattcacaaacaagaattgataattgttacatggattataatagtatagtcatggaagatcctgttcaagt |
519 |
Q |
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| T |
15180545 |
gaattggaattttgttgaagttagcagggaattcacaaacaagaattgataattgttacatggattataatagtatagtcatggaagatcctgttcaagt |
15180644 |
T |
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| Q |
520 |
tcatctcact |
529 |
Q |
| |
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|||| ||||| |
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| T |
15180645 |
tcatgtcact |
15180654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 47 - 529
Target Start/End: Complemental strand, 38859721 - 38859239
Alignment:
| Q |
47 |
ggaatttactatgaagacataacatttagagatatcctctttgattcaagctaccgaggtggaggaatattcatcgtcgattcagctagaatcagaatcg |
146 |
Q |
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||||| |||||||||||| |||| || || || ||||||||||||||||| ||| |||| |||||| | ||||| || ||||| ||||||| | | ||| |
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| T |
38859721 |
ggaatatactatgaagacgtaactttcagggacatcctctttgattcaaggtacagaggaggaggacttttcattgttgattccgctagaacccggatca |
38859622 |
T |
|
| Q |
147 |
acaattgtttcttcctccatttcaacacagaaggaattaaagttcaaagtggccatgaaaccttcatatcaagtagttttcttggacaacactcaacagt |
246 |
Q |
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|||| || |||||| | ||||||| ||||||||||||| ||| || || ||||| || |||||||||||| ||||||||||||||||||||||||| |
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| T |
38859621 |
acaactgcttcttcttgcatttcaccacagaaggaattctagtgcagcaagggcatgagacattcatatcaagttgttttcttggacaacactcaacagt |
38859522 |
T |
|
| Q |
247 |
cggcggagacaaaggcgaaagacaattttcgggaactgcaattgatcttgctagcaacgacaatgctatcactgatgtcgcaattttctcagcagccatt |
346 |
Q |
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||||| ||| | ||||| | | | ||| || | |||||||||||||| || |||||||| |||||||||||||| |||||||| ||||||| | |
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| T |
38859521 |
tggcggtgaccatggcgagaaggactattccggggtcggtattgatcttgctagtaatgacaatgcaatcactgatgtcgcgattttctcggcagccact |
38859422 |
T |
|
| Q |
347 |
ggaattgttgttaggggacaagctaacataatcacaggtgtgcattgttataacaaagcaacaggttttggtggaattggaattttgttgaaattagctg |
446 |
Q |
| |
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|| ||||| | || || || |||||||| | |||| ||||||||||||||||||||| |||| ||||| || || || || || ||||||| || | |
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| T |
38859421 |
ggtattgtgctaagaggtcaggctaacattctatcaggggtgcattgttataacaaagcagcaggatttggaggtataggtatcttagtgaaattggcag |
38859322 |
T |
|
| Q |
447 |
ggaattcacaaacaagaattgataattgttacatggattataatagtatagtcatggaagatcctgttcaagttcatctcact |
529 |
Q |
| |
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| ||||| ||| |||||||| || ||||| |||||||||| | ||||||| | |||||| ||||||||||||||| ||||| |
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| T |
38859321 |
gaaattctttaactagaattgacaactgttatatggattatactggtatagtaacggaagaccctgttcaagttcatgtcact |
38859239 |
T |
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