View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15873_low_7 (Length: 493)
Name: NF15873_low_7
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15873_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 17 - 479
Target Start/End: Original strand, 50275068 - 50275530
Alignment:
| Q |
17 |
agttatgcactatagaatgtgtcaattcctttagtattctttaggaaatgctgaccataataaattcagagctcggattcgtgaaatgaaatcatttatg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||| |
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| T |
50275068 |
agttatgcactatagaatgtgtcaattcctttagtattctttaggaaatgctgaccataatgaattaagagctctgattcgtgaaatgaaatcatttatg |
50275167 |
T |
|
| Q |
117 |
acaaggagagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatccgcctaagaaaaacaataatgct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50275168 |
acaaggagagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatctgcctaagaaaaacaataatgct |
50275267 |
T |
|
| Q |
217 |
caaaatgttatcactctcaattaaatgtggaataagataatgttgagtgatcaagattacattgtcttaattaattacctgatgaatgaaagtctccagt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275268 |
caaaatgttatcactctcaattaaatgtggaataagataatgttgagtgatcaagattacattgtcttaattaattacctgatgaatgaaagtctccagt |
50275367 |
T |
|
| Q |
317 |
ctggaaagcttggccattgaaagagccatttgacccatatactcagcaacatttccagatccagtggacgtggaggaaagtgtctctgaaagagattgtt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275368 |
gtggaaagcttggccattgaaagagccatttgacccatatactcaacaacatttccagatccagtggacgtggaggaaagtgtctctgaaagagattgtt |
50275467 |
T |
|
| Q |
417 |
gcaaagcttccatgccttgagataatgcatcttcagcctgttgacaagaatgctgcagattga |
479 |
Q |
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| T |
50275468 |
gcaaaccttccattccttgagataatgcatcttcagcctgttgacaagaatgctgcagattga |
50275530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 17 - 479
Target Start/End: Original strand, 50279092 - 50279554
Alignment:
| Q |
17 |
agttatgcactatagaatgtgtcaattcctttagtattctttaggaaatgctgaccataataaattcagagctcggattcgtgaaatgaaatcatttatg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||| |
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| T |
50279092 |
agttatgcactatagaatgtgtcaattcctttagtattctttaggaaatgctgaccataatgaattaagagctctgattcgtgaaatgaaatcatttatg |
50279191 |
T |
|
| Q |
117 |
acaaggagagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatccgcctaagaaaaacaataatgct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50279192 |
acaaggagagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatctgcctaagaaaaacaataatgct |
50279291 |
T |
|
| Q |
217 |
caaaatgttatcactctcaattaaatgtggaataagataatgttgagtgatcaagattacattgtcttaattaattacctgatgaatgaaagtctccagt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279292 |
caaaatgttatcactctcaattaaatgtggaataagataatgttgagtgatcaagattacattgtcttaattaattacctgatgaatgaaagtctccagt |
50279391 |
T |
|
| Q |
317 |
ctggaaagcttggccattgaaagagccatttgacccatatactcagcaacatttccagatccagtggacgtggaggaaagtgtctctgaaagagattgtt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279392 |
gtggaaagcttggccattgaaagagccatttgacccatatactcaacaacatttccagatccagtggacgtggaggaaagtgtctctgaaagagattgtt |
50279491 |
T |
|
| Q |
417 |
gcaaagcttccatgccttgagataatgcatcttcagcctgttgacaagaatgctgcagattga |
479 |
Q |
| |
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||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50279492 |
gcaaaccttccattccttgagataatgcatcttcagcctgttgacaagaatgctgcagattga |
50279554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 456
Target Start/End: Complemental strand, 22610691 - 22610624
Alignment:
| Q |
389 |
gaggaaagtgtctctgaaagagattgttgcaaagcttccatgccttgagataatgcatcttcagcctg |
456 |
Q |
| |
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||||||||||| ||| |||||||||||| ||| ||||||||||| |||||||| ||||| |||||||| |
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| T |
22610691 |
gaggaaagtgtttctaaaagagattgtttcaatgcttccatgccgtgagataaagcatcctcagcctg |
22610624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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