View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15874_high_1 (Length: 427)
Name: NF15874_high_1
Description: NF15874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15874_high_1 |
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| [»] chr4 (10 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 31 - 427
Target Start/End: Complemental strand, 30264777 - 30264380
Alignment:
| Q |
31 |
aatagtacgtacttttt-atgtgttttagtgtttatatttccttacatatctatcatataacaaatattaacatgtgcatgtgcatgcaaccatgtatat |
129 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30264777 |
aatagtacgtacttttttatgtgttttagtgtttatatttccttacatatttatcatataacaaatattaacatgtgcatatgcatgcaaccatgtatat |
30264678 |
T |
|
| Q |
130 |
aggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattga |
229 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30264677 |
aggtgagagataaagatggaaatatgaaatggaaaaaagtagaggtaaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattga |
30264578 |
T |
|
| Q |
230 |
attctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatcca |
329 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30264577 |
attctatgatcaagattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatcca |
30264478 |
T |
|
| Q |
330 |
acaagcaatgctgcttacaccataatattcaaacttcatcatgcacttgatgatg--tcctctctcatgggagtgctcttctttcttgtcttcatagagc |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||||||||||||||||||| |
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| T |
30264477 |
acaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgg--gtgctcttctttcttgtcttcatagagc |
30264380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 31 - 427
Target Start/End: Original strand, 30287411 - 30287808
Alignment:
| Q |
31 |
aatagtacgtactttt-tatgtgttttagtgtttatatttccttacatatctatcatataacaaatattaacatgtgcatgtgcatgcaaccatgtatat |
129 |
Q |
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|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30287411 |
aatagtacgtacttttttatgtgttttagtgtttatatttccttacatatttatcatataacaaatattaacatgtgcatatgcatgcaaccatgtatat |
30287510 |
T |
|
| Q |
130 |
aggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattga |
229 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287511 |
aggtgagagataaagatggaaatatgaaatggaaaaaagtagaggtaaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattga |
30287610 |
T |
|
| Q |
230 |
attctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatcca |
329 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30287611 |
attctatgatcaagattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatcca |
30287710 |
T |
|
| Q |
330 |
acaagcaatgctgcttacaccataatattcaaacttcatcatgcacttgatgatg--tcctctctcatgggagtgctcttctttcttgtcttcatagagc |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||||||||||||||||||| |
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| T |
30287711 |
acaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgg--gtgctcttctttcttgtcttcatagagc |
30287808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 125 - 427
Target Start/End: Complemental strand, 30271576 - 30271274
Alignment:
| Q |
125 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
224 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||||||||| |||||||| || || |||||||| | | |||||| | |||||||||| ||| ||| |
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| T |
30271576 |
tatataggtgagagacaaagatggcaaaatgaaatggaaaaaggtagaggtgaagcctgaagatcatatgcacgttccaatattccctaaaagtgaatca |
30271477 |
T |
|
| Q |
225 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
324 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||||||| | || || | |
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| T |
30271476 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatacatttaattaaat |
30271377 |
T |
|
| Q |
325 |
atccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttgatgatg--tcctctctcatgggagtgctcttctttcttgtcttcat |
422 |
Q |
| |
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|||||||||| |||||| || | |||||||||||||| |||||||||| ||||| | ||||||||||| ||||||||||||||||||| || |
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| T |
30271376 |
atccaacaagaaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggttactctctcatgg--gtgctcttctttcttgtctacaa |
30271279 |
T |
|
| Q |
423 |
agagc |
427 |
Q |
| |
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||||| |
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|
| T |
30271278 |
agagc |
30271274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 125 - 427
Target Start/End: Original strand, 30280613 - 30280915
Alignment:
| Q |
125 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
224 |
Q |
| |
|
|||||||||||||||| ||||||| || |||| ||||||||| |||||| || || |||||||| | ||||||||| | |||||||||| ||| ||| |
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|
| T |
30280613 |
tatataggtgagagatcaagatggcaaaatgatgtggaaaaaaatagaggcgaagcctgaagatcatatgaaggttccaatattccctaaaagtgaatca |
30280712 |
T |
|
| Q |
225 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
324 |
Q |
| |
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|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||| ||| | || || | |
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|
| T |
30280713 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatgcatttaattaaat |
30280812 |
T |
|
| Q |
325 |
atccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttgatgatg--tcctctctcatgggagtgctcttctttcttgtcttcat |
422 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||| |||||||||| ||||| | ||||||||||| ||||||||||||||||||| || |
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|
| T |
30280813 |
atccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggttactctctcatgg--gtgctcttctttcttgtctacaa |
30280910 |
T |
|
| Q |
423 |
agagc |
427 |
Q |
| |
|
||||| |
|
|
| T |
30280911 |
agagc |
30280915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 125 - 418
Target Start/End: Complemental strand, 30304643 - 30304350
Alignment:
| Q |
125 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
224 |
Q |
| |
|
|||||||||||||||| ||||||| || |||| ||||||||| |||||| || || |||||||| | ||||||||| | |||||||||| ||| ||| |
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|
| T |
30304643 |
tatataggtgagagatcaagatggcaaaatgatgtggaaaaaaatagaggcgaagcctgaagatcatatgaaggttccaatattccctaaaagtgaatca |
30304544 |
T |
|
| Q |
225 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
324 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||| ||| | || || | |
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|
| T |
30304543 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatgcatttaattaaat |
30304444 |
T |
|
| Q |
325 |
atccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttgatgatg--tcctctctcatgggagtgctcttctttcttgtct |
418 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||| |||||||||| ||||| | ||||||||||| ||||||||||||||||||| |
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|
| T |
30304443 |
atccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggttactctctcatgg--gtgctcttctttcttgtct |
30304350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 282 - 427
Target Start/End: Complemental strand, 30048723 - 30048578
Alignment:
| Q |
282 |
acaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttgatg |
381 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| || |
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|
| T |
30048723 |
acaccacaagataaaccactttgggaaattcatgttatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttcatcatggacttggtg |
30048624 |
T |
|
| Q |
382 |
atg--tcctctctcatgggagtgctcttctttcttgtcttcatagagc |
427 |
Q |
| |
|
||| | ||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
30048623 |
atggttactctctcatgg--gtgctcttctttcttgtcttcaaagagc |
30048578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 282 - 427
Target Start/End: Complemental strand, 30063064 - 30062919
Alignment:
| Q |
282 |
acaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttgatg |
381 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| || |
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|
| T |
30063064 |
acaccacaagataaaccactttgggaaattcatgttatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttcatcatggacttggtg |
30062965 |
T |
|
| Q |
382 |
atg--tcctctctcatgggagtgctcttctttcttgtcttcatagagc |
427 |
Q |
| |
|
||| | ||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
30062964 |
atggttactctctcatgg--gtgctcttctttcttgtcttcaaagagc |
30062919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 294 - 427
Target Start/End: Complemental strand, 30228850 - 30228717
Alignment:
| Q |
294 |
aaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttgatgatg--tcctctc |
391 |
Q |
| |
|
||||| ||||||||||| ||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| ||||| | ||||| |
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|
| T |
30228850 |
aaaccactttgggaaattcatattatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttaatcatgcacttggtgatggttactctc |
30228751 |
T |
|
| Q |
392 |
tcatgggagtgctcttctttcttgtcttcatagagc |
427 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||| |
|
|
| T |
30228750 |
tcat--gagtgctcttctttcttgtcttcaaagagc |
30228717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 276 - 427
Target Start/End: Complemental strand, 30032483 - 30032332
Alignment:
| Q |
276 |
gaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcac |
375 |
Q |
| |
|
||||| |||||| |||| ||||| ||||||||||| ||| ||||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||| |
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|
| T |
30032483 |
gaaagaacaccacaagataaaccactttgggaaattcatattatcaattatccaacaaccaatgaagcttgcaccataatattcaaacttcatcatgcac |
30032384 |
T |
|
| Q |
376 |
ttgatgatg--tcctctctcatgggagtgctcttctttcttgtcttcatagagc |
427 |
Q |
| |
|
||| ||| | | ||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
30032383 |
ttggtgacggttactctctcatgg--gtgctcttctttcttgtcttcaaagagc |
30032332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 427
Target Start/End: Original strand, 30220209 - 30220347
Alignment:
| Q |
289 |
aagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttgatgatg--tc |
386 |
Q |
| |
|
|||| ||||||||||||||||| ||| | || || |||||||||||||||||| || | |||||||||||||| |||||||||| ||||| | |
|
|
| T |
30220209 |
aagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggtta |
30220308 |
T |
|
| Q |
387 |
ctctctcatgggagtgctcttctttcttgtcttcatagagc |
427 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
30220309 |
ctctctcatggg--tgctcttctttcttgtcttcaaagagc |
30220347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 378
Target Start/End: Complemental strand, 79679 - 79601
Alignment:
| Q |
300 |
ctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttg |
378 |
Q |
| |
|
|||||||| |||||| |||| || |||||||||| ||||| ||| ||| || |||||||||||||||||||||||| |
|
|
| T |
79679 |
ctttgggagatacatattattaaatatccaacaaaaaatgcagctggtaccttagtattcaaacttcatcatgcacttg |
79601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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