View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15874_high_4 (Length: 368)
Name: NF15874_high_4
Description: NF15874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15874_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 123 - 340
Target Start/End: Original strand, 3131031 - 3131248
Alignment:
| Q |
123 |
tgctcacgtgtcattttaagtgaataaaaatggatcgttagatttacagaaataaagggttaaaatttgacatcaaattaaactttgacactgatatata |
222 |
Q |
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| T |
3131031 |
tgctcacgtgtcattttaagtgaataaaaatggatcgttagatttacataaataaatggttaaaatttgacatcaaattaaactttgacattgatatata |
3131130 |
T |
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| Q |
223 |
aatggaaaaggatatatatagcgaattggtttatcctgaaaccgttccgacgtgtgctttacatagcacatgtttttattgacttcannnnnnnccacta |
322 |
Q |
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| T |
3131131 |
aatggaaaaagatatatatagcgaattgatttatcctgaaaccgttccgacgtatgctttacatagcacatgtttttgttgacttcatttttttccacta |
3131230 |
T |
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| Q |
323 |
cctctcttgaattccgct |
340 |
Q |
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| T |
3131231 |
cctctcttgaattccgct |
3131248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 3130946 - 3131004
Alignment:
| Q |
2 |
cacgaaggttaaaataagaaaaagaataagaaatttagacaatatcagggtatgttgcg |
60 |
Q |
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| T |
3130946 |
cacgaaggttaaaataagaaaaagaataagaaatttagacaatatcagggtatgttgcg |
3131004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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