View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15874_high_9 (Length: 340)
Name: NF15874_high_9
Description: NF15874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15874_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 283
Target Start/End: Complemental strand, 235685 - 235421
Alignment:
| Q |
20 |
gacatcatcacacccgaagacagagaaacaataagaccaccatcctcactcgatggccatgtcgtcagccactccaatcctaaaaaagtggtcgctgtca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
235685 |
gacatcatcacacccgaagacagagaaacaataagaccaccgtcctcacccgatggccatgtcgtcagccacttcaatcctaaaatagtggtcgctgtca |
235586 |
T |
|
| Q |
120 |
tgtcccatggaaaaaa-ccctatcattgtcggctcattgaactgtactggagaagaaccagtagtgttgaaatgtggcgatgagaattggaaacctattc |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
235585 |
tgtcccatggaaaaaaaccctatcattgtcggctcgttgaactgtactggagaagaaccagtagtgttgaaatgtggcgatgagaattggaaacttattc |
235486 |
T |
|
| Q |
219 |
ctggaatgtcggcctatttaggagacattcgtgttttcaaaggccagccttatgtggttgataaa |
283 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
235485 |
ctggaatgtcggcctatttaggagacatccgtgttttcaaaggccagccttatgtggttgataaa |
235421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 126 - 304
Target Start/End: Original strand, 8814023 - 8814204
Alignment:
| Q |
126 |
atggaaaaaaccctatcattgtcggctcattgaactgtactggagaagaacca---gtagtgttgaaatgtggcgatgagaattggaaacctattcctgg |
222 |
Q |
| |
|
||||||| || |||||||| |||| |||||| ||||||| |||||||||| | |||||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
8814023 |
atggaaataaacctatcatcgtcgcctcatttaactgtaaaggagaagaacaactggtagtgttcaaatgcggcgatgagaattggaagtttattcctga |
8814122 |
T |
|
| Q |
223 |
aatgtcggcctatttaggagacattcgtgttttcaaaggccagccttatgtggttgataaaactgggcggactgttactgtt |
304 |
Q |
| |
|
|||||| | ||| || ||||| || |||| ||||||||| ||| ||||||||| || |||||||| | ||||||||||||| |
|
|
| T |
8814123 |
aatgtcagtctactttggagatatccgtgctttcaaaggtcagtgttatgtggtagacaaaactggacagactgttactgtt |
8814204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 176 - 304
Target Start/End: Original strand, 251114 - 251242
Alignment:
| Q |
176 |
ccagtagtgttgaaatgtggcgatgagaattggaaacctattcctggaatgtcggcctatttaggagacattcgtgttttcaaaggccagccttatgtgg |
275 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||| |||| ||| |||||||| ||||| ||||||||| ||||||||||||||| ||||||| || |
|
|
| T |
251114 |
ccagtagtgttcaaatgcggtgatgagaattggaaggctatacctaacatgtcggcttattttggagacatttgtgttttcaaaggccgaccttatgcgg |
251213 |
T |
|
| Q |
276 |
ttgataaaactgggcggactgttactgtt |
304 |
Q |
| |
|
| || || ||||| ||||| ||||||||| |
|
|
| T |
251214 |
tagacaatactggacggacagttactgtt |
251242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 169 - 288
Target Start/End: Complemental strand, 247267 - 247148
Alignment:
| Q |
169 |
agaagaaccagtagtgttgaaatgtggcgatgagaattggaaacctattcctggaatgtcggcctatttaggagacattcgtgttttcaaaggccagcct |
268 |
Q |
| |
|
|||| |||||| | |||||||||| || |||||||||||||| |||| ||| ||||||| ||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
247267 |
agaacaaccagcattgttgaaatgcggtgatgagaattggaaggctatacctcacatgtcggtttatttaggagacatttgtgttttcaaaggccgacct |
247168 |
T |
|
| Q |
269 |
tatgtggttgataaaactgg |
288 |
Q |
| |
|
|||| ||| || |||||||| |
|
|
| T |
247167 |
tatgcggtagacaaaactgg |
247148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University