View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15875_high_10 (Length: 386)
Name: NF15875_high_10
Description: NF15875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15875_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 165; Significance: 4e-88; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 8196442 - 8196610
Alignment:
| Q |
27 |
catctatattgagactgccctgtccatgtctttccaagtttgactctgttatttgtttgtcctgtacgcatgctacattggatggtaattaatatatcag |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8196442 |
catctatattgagactgccctgtccatgtctttccaagtttgactctgttatttgtttgtcctgtacgcatgctacattggatggtaattaatatatcag |
8196541 |
T |
|
| Q |
127 |
tttgtcaatgccagcatgataattctttactttagcagacaaatttgaattcatgttattcttgtgagg |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8196542 |
tttgtcaatgccagcatgataattctttactttagctgacaaatttgaattcatgttattcttgtgagg |
8196610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 8201202 - 8201370
Alignment:
| Q |
27 |
catctatattgagactgccctgtccatgtctttccaagtttgactctgttatttgtttgtcctgtacgcatgctacattggatggtaattaatatatcag |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8201202 |
catctatattgagactgccctgtccatgtctttccaagtttgactctgttatttgtttgtcctgtacgcatgctacattggatggtaattaatatatcag |
8201301 |
T |
|
| Q |
127 |
tttgtcaatgccagcatgataattctttactttagcagacaaatttgaattcatgttattcttgtgagg |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8201302 |
tttgtcaatgccagcatgataattctttactttagctgacaaatttgaattcatgttattcttgtgagg |
8201370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 196 - 361
Target Start/End: Original strand, 8196682 - 8196847
Alignment:
| Q |
196 |
cagcttcctttatgcaaagttggaaattttctaatttcaacttttgctccatgctttaattcatatgtttttcatcaatctattaactatttgtttctgt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8196682 |
cagcttcctttatgcaaagttggaaattttctaatttcaacttttgctccatgctttaattcatatgtttttcatcaatctattaactatttgtttctgt |
8196781 |
T |
|
| Q |
296 |
tgcttctggttcatgaccatctgcggccaaccttattctgttgaataacctttatgctgggtgatg |
361 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8196782 |
tgcttctgattcatgaccatctgctgccaaccttattctgttgaataacctttatgctgggtgatg |
8196847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 196 - 361
Target Start/End: Original strand, 8201442 - 8201607
Alignment:
| Q |
196 |
cagcttcctttatgcaaagttggaaattttctaatttcaacttttgctccatgctttaattcatatgtttttcatcaatctattaactatttgtttctgt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8201442 |
cagcttcctttatgcaaagttggaaattttctaatttcaacttttgctccatgctttaattcatatgtttttcatcaatctattaactatttgtttctgt |
8201541 |
T |
|
| Q |
296 |
tgcttctggttcatgaccatctgcggccaaccttattctgttgaataacctttatgctgggtgatg |
361 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8201542 |
tgcttctgattcatgaccatctgctgccaaccttattctgttgaataacctttatgctgggtgatg |
8201607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 200 - 281
Target Start/End: Complemental strand, 4918121 - 4918040
Alignment:
| Q |
200 |
ttcctttatgcaaagttggaaattttctaatttcaacttttgctccatgctttaattcatatgtttttcatcaatctattaa |
281 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
4918121 |
ttccttaatgcaaagttgcaaactttctaatatcaacttttgctccatgctttaattcatatgtttttcatcgacctattaa |
4918040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University