View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15875_high_12 (Length: 377)
Name: NF15875_high_12
Description: NF15875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15875_high_12 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 21 - 377
Target Start/End: Original strand, 10008650 - 10009006
Alignment:
| Q |
21 |
acatcatccacaatccctcataccaaaatgatatacattttgcacaatcaactcaaacaaaaatgagaatcagaccttttcagtatttttcacagactgg |
120 |
Q |
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| T |
10008650 |
acatcatccacaatccctcataccaaaatgatatacattttgcacaatcaactcaaacaaaaatgagaatcagaccttttcagtatttttcacagactgg |
10008749 |
T |
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| Q |
121 |
ctcatcatgagactactctctttgagttgttttgccaacaccaccatctcatctgtcaaatcatcttgaagctttctgaggagtataagtgtcaacaaag |
220 |
Q |
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| T |
10008750 |
ctcatcatgagactactctctttgagttgttttgccaacaccaccatctcatctgtcaaatcatcttgaagctttctgaggagtataagtgtcaacaaag |
10008849 |
T |
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| Q |
221 |
aagtgaaaaaattgagagaacaatgaaaaaacaattcatatggttaaaagcaaagcattgagagagcaaacacaaatgacaataacaattagctatataa |
320 |
Q |
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| T |
10008850 |
aagtgaaaaaattgagagaacaatgaaaaaacaattcatatggttaaaagcaaagcattgagagagcaaacacaaatgacaataacaattagctatataa |
10008949 |
T |
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| Q |
321 |
tacattttttgcatataattcaatagcaactacgagagtattggtatcaaaatataa |
377 |
Q |
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| T |
10008950 |
tacattttttgcatataattcaatagcaactacgagagtattggtatcaaaatataa |
10009006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 80 - 377
Target Start/End: Complemental strand, 52656781 - 52656479
Alignment:
| Q |
80 |
aaaatgagaatcagaccttttcagtatttttcacagactggctcatcatgagactactctctttgagttgttttgccaacaccaccatctcatctgtcaa |
179 |
Q |
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| T |
52656781 |
aaaatgagaatcagaccttttcagtatttttcacagactggctcatcatgagactactctctttgagttgttttgccaacaccaccatctcatctgtcaa |
52656682 |
T |
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| Q |
180 |
atcatcttgaagctttctgaggagtataagtgtcaacaaagaagtgaaaaaattgagagaacaatgaaaaaacaattcatatggttaaaagcaaagcatt |
279 |
Q |
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| T |
52656681 |
atcatcttgaagctttctgaggaatataagtttcaacaaagaagtgaaaaaattgacagaacagtgaaaaaacaattcatatagttaaaagcaaagcatt |
52656582 |
T |
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| Q |
280 |
gagagagcaaacacaaatga------caataacaattagctatataatacattttttgcatataattcaatagcaactacgagagtattggtatcaaaat |
373 |
Q |
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| T |
52656581 |
gagagagcaaacacaaatgacaatgacaataacaattagctatctaaaaca-tttttgcatataattcaatagcaactgcgagagtattggtatcaaaac |
52656483 |
T |
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| Q |
374 |
ataa |
377 |
Q |
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|||| |
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| T |
52656482 |
ataa |
52656479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 52656871 - 52656820
Alignment:
| Q |
21 |
acatcatccacaatccctcata-ccaaaatgatatacattttgcacaatcaa |
71 |
Q |
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| T |
52656871 |
acatcatccacaatccctcattgccaaaatgagatacattttgcacaatcaa |
52656820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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