View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15875_high_13 (Length: 376)
Name: NF15875_high_13
Description: NF15875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15875_high_13 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 22 - 376
Target Start/End: Original strand, 3214958 - 3215311
Alignment:
| Q |
22 |
catcatcaagagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3214958 |
catcatcaagagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctc |
3215057 |
T |
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| Q |
122 |
aacaacagagataactggactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattgaagcaagattg |
221 |
Q |
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| T |
3215058 |
aacaacagagataactggactataaccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattgaagcaagattg |
3215157 |
T |
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| Q |
222 |
tctataagattgcgagtacgaatgagatactcttgtaccgtacgattatcaaacgaggtagcgcgcaattcaacacgaatgttgtcttgcctttgcaagc |
321 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
3215158 |
tctataagattgcgagtatgaatgagatactcttgcaccgtacgattatcaaacgaggtagcacgcaattcaacacgaa-gttgtcttgcctttgcaagc |
3215256 |
T |
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| Q |
322 |
atctgcttttgaaaataggtcacaagtttgttctagagtttatacgcatgcgaag |
376 |
Q |
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| T |
3215257 |
atttgcttttgaaaataggtcacaagtttgttctagagtttatacgcatgcgaag |
3215311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 21 - 376
Target Start/End: Original strand, 32460471 - 32460826
Alignment:
| Q |
21 |
acatcatcaagagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactct |
120 |
Q |
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| T |
32460471 |
acatcatcaatagtcttcttcttgaacttgtcaagacgagtctcatgagcaattaacagagactctacctcatcaatatcaatagtgtcaaatttgcttt |
32460570 |
T |
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| Q |
121 |
caacaacagagataactggactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattg-aagcaagat |
219 |
Q |
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||||||| || || ||||||||||| | |||||||||||||| ||||| |||||||| |||||| | | |||| ||||||| |||| | ||||||||| |
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| T |
32460571 |
caacaactgaaatcactggactatactcttgtggtaaaccttctaaaattacatctaaatgctgagtaatgggaactggatcaccaatggaaagcaagat |
32460670 |
T |
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| Q |
220 |
tgtctataagattgcgagtacgaatgagatactcttgtaccgtacgattatcaaacgaggtagcgcgcaattcaacacgaatgttgtcttgcctttgcaa |
319 |
Q |
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| T |
32460671 |
tatcaattaaattgcgaatgcgaagaagatgctcctgtaccgtacgattatcaagagaagtagaacgcagttcaacacgta-actgccttgcctttgcac |
32460769 |
T |
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| Q |
320 |
gcatctgcttttgaaaataggtcacaagtttgttctagagtttatacgcatgcgaag |
376 |
Q |
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| T |
32460770 |
gcatctgcttgtgaaaataggtcacaagtttgttccgaagttcatacgcatgcgaag |
32460826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 371
Target Start/End: Original strand, 36399448 - 36399779
Alignment:
| Q |
39 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacagagataactg |
138 |
Q |
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|||||||| || |||||||| ||||||||||||| || ||||| ||||| || || | ||||||||||||||| || || || || ||||| ||||| | |
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| T |
36399448 |
ttcttgaatttatcaagacgtgtttcatgagcaagaagaagagactcaacttcgtcaacgtcaataacatcaaatttgctttccactacagatataacag |
36399547 |
T |
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| Q |
139 |
gactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattgaagcaagattgtctataagattgcgagt |
238 |
Q |
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| T |
36399548 |
gactaaaatcttgcggtaaaccttctaaaatcacatccaaatgttgattaacaggaactggatctcctatagaggctagattatcaacaagatcacgaat |
36399647 |
T |
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| Q |
239 |
acgaatgagatactcttgtaccgtacgattatcaaacgaggtagcgcgcaattcaacacgaatgttgtcttgcctttgcaagcatctgcttttgaaaata |
338 |
Q |
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| T |
36399648 |
acgaagaagataatcctgtaccgtaagatttgcaagagaagtagaacgcagttcaacactaa-gttgacgcgccttcgcacgcatctgtttgtgaaaata |
36399746 |
T |
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| Q |
339 |
ggtcacaagtttgttctagagtttatacgcatg |
371 |
Q |
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| T |
36399747 |
tgccacaagtttatcccaaagttcatacgcatg |
36399779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 52665850 - 52665923
Alignment:
| Q |
39 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaa |
112 |
Q |
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| T |
52665850 |
ttcttgaatttatcaagacgtgtttcatgagcaagaagaagagactcaacttcgtcaatgtcaataacatcaaa |
52665923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 195
Target Start/End: Original strand, 24789296 - 24789452
Alignment:
| Q |
39 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacagagataactg |
138 |
Q |
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| T |
24789296 |
ttcttgaatttatcaagacgtgtttcatgagtaagaagaagagactcaacttcgtcaacgtcaataacatcaaatttgctttccactacaaatataatag |
24789395 |
T |
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| Q |
139 |
gactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaa |
195 |
Q |
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| T |
24789396 |
gactaaaatcttgtggtaaaccttctaaaatcacatccaaatgttgattaacaggaa |
24789452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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