View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15875_high_16 (Length: 365)
Name: NF15875_high_16
Description: NF15875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15875_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 34971457 - 34971090
Alignment:
| Q |
1 |
tcataatttattaacattacgtcaattcaacattacat-----------aaatgattgatattcaacaagagtccaatatcacataatttgacgacatat |
89 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
34971457 |
tcataatttattaacattacgccaattcaacattacattaacaatacataaatgattgaaattcaacaagagtccaacatcacataatttgacgacatat |
34971358 |
T |
|
| Q |
90 |
tacacaacattacatcaaataactgaaactccataacataacatcaaacctttaccgtcaatttgggcatatattcacctttgtgacttccttctctttc |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34971357 |
tacacaacattacatcaaataactgaaactccataacataacatcaaacctttactgtcaatttgggcatatattcacctttgtgacttccttctctttc |
34971258 |
T |
|
| Q |
190 |
acatccacctcttgggaatctttccctttaatattcatcactttggcatcattagatttgactatacaatatgccttgcatttagctctaatatttttta |
289 |
Q |
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|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
34971257 |
acatccacctcttgggaatctttccctttgatattcatcactttggcatcattagatttgactatgcaatatgccttgtatttagctctaatatttttta |
34971158 |
T |
|
| Q |
290 |
aaatataaaaccgacacactaaagtagtagttttaggaaaaacaatggcaacactattcatctgtgct |
357 |
Q |
| |
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| T |
34971157 |
aaatataaaaccgacacactaaagtagtagttttaggaaaaataatggcaacactattcatctgtgct |
34971090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 16061310 - 16061350
Alignment:
| Q |
178 |
tccttctctttcacatccacctcttgggaatctttcccttt |
218 |
Q |
| |
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| T |
16061310 |
tccttctctttcccatccaccttttgggaatcttttccttt |
16061350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 178 - 326
Target Start/End: Original strand, 7340506 - 7340654
Alignment:
| Q |
178 |
tccttctctttcacatccacctcttgggaatctttccctttaatattcatcactttggcatcattagatttgactatacaatatgccttgcatttagctc |
277 |
Q |
| |
|
||||||||||| |||| ||||||||| |||||||| |||| ||||||| ||||||| |||| |||||||||||||| || | || ||| ||||||||| |
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| T |
7340506 |
tccttctctttgccatcaacctcttggaaatctttctctttgatattcaccactttgacatccttagatttgactatgcagtttgtcttccatttagcta |
7340605 |
T |
|
| Q |
278 |
taatattttttaaaatataaaaccgacacactaaagtagtagttttagg |
326 |
Q |
| |
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| | |||||| ||||||| ||||||||||||||||| | ||| |||||| |
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| T |
7340606 |
ttacatttttcaaaatatgaaaccgacacactaaagcaatagatttagg |
7340654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 929251 - 929153
Alignment:
| Q |
29 |
aacattacataaatgattgatattcaacaagagtccaatatcacataatttgacgacatattacacaacattacatcaaataac-tgaaactccataac |
126 |
Q |
| |
|
||||||||| ||| ||||| ||||||||| | || || || |||||| ||||| |||| ||||||||||||||||||||||| | |||||||||||| |
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|
| T |
929251 |
aacattacacaaacaattgaaattcaacaacaatctaacattacataaattgactgcatactacacaacattacatcaaataacttaaaactccataac |
929153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 324
Target Start/End: Complemental strand, 35249656 - 35249510
Alignment:
| Q |
178 |
tccttctctttcacatccacctcttgggaatctttccctttaatattcatcactttggcatcattagatttgactatacaatatgccttgcatttagctc |
277 |
Q |
| |
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||||| |||||| | ||||||||||| |||| ||| ||| | | ||||| | ||||||||| ||| |||||||| | || ||| ||||||||||| || |
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| T |
35249656 |
tccttatctttcccgtccacctcttgagaatattttcctgtgacattcaccgttttggcatccttatatttgactcttcagtatatcttgcatttagttc |
35249557 |
T |
|
| Q |
278 |
taatattttttaaaatataaaaccgacacactaaagtagtagtttta |
324 |
Q |
| |
|
||| ||||| ||||||||||| |||| | ||| | |||||||||| |
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| T |
35249556 |
taacgtttttagaaatataaaactgacagagtaaggcagtagtttta |
35249510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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