View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15875_high_19 (Length: 357)
Name: NF15875_high_19
Description: NF15875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15875_high_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 357
Target Start/End: Complemental strand, 52926429 - 52926088
Alignment:
| Q |
16 |
gacagagcttacgttttggataagaccaaacatcttgcaagattcaatattcacgaagctggcaacgttctcttaaagcgtggccaaggcaaactcgaga |
115 |
Q |
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| T |
52926429 |
gacagagcttacgttttggataagaccaaacatcttgcaagattcaatattcacgaagctggcaacgttctcttaaagcgtggccaaggcaaactcgaga |
52926330 |
T |
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| Q |
116 |
aacaattccgcatgaattgcatcggttgcggtctctttgtttgctatcgctctcaacaagacttcgattcttcctctttcatttatgttcttgaccaagc |
215 |
Q |
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| T |
52926329 |
aacaattccgcatgaattgcatcggttgcggtctctttgtttgctatcgctctcaacaagacttcgattcttcctctttcatttatgttcttgaccaagc |
52926230 |
T |
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| Q |
216 |
actcagtactgttgctgctgaaaccaacccacaggatgctcccgttccaccctgcatttccactcttgaaggtggtcttgttcaacttgctattgaagtt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52926229 |
actcagtactgttgctgctgaaaccaacccacaggatgctcccgttccaccctgcatttccactcttgaaggtggtcttgttcaacttgctattgaagtt |
52926130 |
T |
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| Q |
316 |
gaggatcgtgctcaccgctccgcaatcaccagagtaaatgct |
357 |
Q |
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| T |
52926129 |
gaagatcgtgctcaccgctccgcaatcaccagagtaaatgct |
52926088 |
T |
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