View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15875_high_2 (Length: 458)
Name: NF15875_high_2
Description: NF15875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15875_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 24 - 366
Target Start/End: Complemental strand, 4986154 - 4985817
Alignment:
| Q |
24 |
tgacacaagaatttagagctaataagagcaacaaataacgtgagctgtgacaatgagatggacatcatcatcatgcaaaaatatggtaagacacactaac |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||| | |||| | ||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
4986154 |
tgacacaagaatttagagctaataagagcaacaaataaca--atgtgttaaaatggg---gacattaacatcatgcaaaaatatggtaagacacactaac |
4986060 |
T |
|
| Q |
124 |
cttaaaaatgagactgttannnnnnnaaaccttttttatgacataacagttgccataatctcaaggaatctcacctacaaagttcattgtcaacagttag |
223 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4986059 |
cttaaaaatgagactgttatttttttaaaccttttttatgacataacagttgccataatctcaaggaatctcaccgacaaagttcattgtcaacagttag |
4985960 |
T |
|
| Q |
224 |
gtttgaaatttgattgagactttggagctcaaaattttcaactgtcggcaagtagtgtcctatatttacattaaaattacaagagtttgtgccgcaattt |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4985959 |
gtttgaaatttgattgagactttggagctcaaaattttctactttcggcaagtagtgtcctatatttacattaaaattacaagagtttgtgccgcaattt |
4985860 |
T |
|
| Q |
324 |
aaacaaattttgatacacaatcaagaataaaatatcttctcag |
366 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4985859 |
aaacaaattttgatatacaatcaagaataaaatatcttctcag |
4985817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University