View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15875_high_26 (Length: 332)
Name: NF15875_high_26
Description: NF15875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15875_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 94 - 323
Target Start/End: Original strand, 25254532 - 25254761
Alignment:
| Q |
94 |
tacatatatttcataaaggaagcatttatgtgaaggtaataatttttatttatgaggattctaaccttactaagccatatgcaaaaccaaactgttccta |
193 |
Q |
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| T |
25254532 |
tacatatatttcgtaaaggaagcatttatgtgaaggtaataatttttatgtatgcgaattctaaccttactaagccatatacaaaaccaaactgttccta |
25254631 |
T |
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| Q |
194 |
gagaaccaaaggagtaaaacaccgatggccatccatactgatgaattaggaaaggtgaaaaggccaatccagtgaccgatccaaggtacatgccactgta |
293 |
Q |
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| T |
25254632 |
gagaaccaaaggagtaaaacaccgatggccatccatactgatgaattaggaaaggtgaaaaggccaatccagtgaccgatccaaggtacatgccactgta |
25254731 |
T |
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| Q |
294 |
taccagagctaatgatctacttctctctgc |
323 |
Q |
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| T |
25254732 |
taccagagctaatgatctacttctctctgc |
25254761 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 320
Target Start/End: Original strand, 11319736 - 11319857
Alignment:
| Q |
199 |
ccaaaggagtaaaacaccgatggccatccatactgatgaattaggaaaggtgaaaaggccaatccagtgaccgatccaaggtacatgccactgtatacca |
298 |
Q |
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||||| ||||| ||||| |||||||||||| | | || ||||||||||| || || |||| || ||||| || ||||||||||||||||| ||||| | |
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| T |
11319736 |
ccaaatgagtagaacacagatggccatccaaatttttggattaggaaaggcgagaatcccaagcctgtgacagaaccaaggtacatgccactatatacta |
11319835 |
T |
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| Q |
299 |
gagctaatgatctacttctctc |
320 |
Q |
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| T |
11319836 |
gtgcaagtgatctgcttctctc |
11319857 |
T |
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