View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15875_high_3 (Length: 428)

Name: NF15875_high_3
Description: NF15875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15875_high_3
NF15875_high_3
[»] chr5 (23 HSPs)
chr5 (21-399)||(28080547-28080925)
chr5 (215-399)||(28080804-28080988)
chr5 (219-373)||(28080871-28081025)
chr5 (315-373)||(27930000-27930058)
chr5 (315-373)||(27930408-27930466)
chr5 (315-373)||(27930612-27930670)
chr5 (315-373)||(28081171-28081229)
chr5 (315-373)||(28081375-28081433)
chr5 (315-373)||(28081579-28081637)
chr5 (315-373)||(28081783-28081841)
chr5 (315-373)||(27930816-27930874)
chr5 (310-364)||(27931029-27931083)
chr5 (247-306)||(27931024-27931083)
chr5 (252-310)||(27930000-27930058)
chr5 (252-310)||(27930204-27930262)
chr5 (252-310)||(27930408-27930466)
chr5 (252-310)||(27930612-27930670)
chr5 (252-310)||(28081171-28081229)
chr5 (252-310)||(28081375-28081433)
chr5 (252-310)||(28081579-28081637)
chr5 (252-310)||(28081783-28081841)
chr5 (315-373)||(27930204-27930262)
chr5 (252-310)||(27930816-27930874)


Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 21 - 399
Target Start/End: Original strand, 28080547 - 28080925
Alignment:
Q  21 acatcatcattgatgacattgttatctactgcataatcagaaacatgatgcaattgtagagttggtgtcccttgataggataagtgtggatacaaattct 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28080547 acatcatcattgatgacattgttatctactgcataatcagaaacatgatgcaattgtagagttggtgtcccttgataggataagtgtggatacaaattct 28080646  T
Q  121 tgttgccaatactcatcatattcgagtgttgagaaatatcaatgagaggatcaaccggaaaattgatagtacctgtagaatcattcatatgaagtaacga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28080647 tgttgccaatactcatcatattcgagtgttgagaaatatcaatgagaggatcaaccggaaaattgatagtacctgtagaatcattcatatgaagtaacga 28080746  T
Q  221 tcgctggtcaaaagattggcaatgtcttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtcttgaactgttg 320  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28080747 tcgctggtcaaaagatcggcaatgtcttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtcttgaactgttg 28080846  T
Q  321 aaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtcttgaactgttgaacaaatgattagatg 399  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28080847 aaaaaatgattagatgatgataatgatcgctggtcaaaagattggcgatgtcttgaactgttgaacaaatgattagatg 28080925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 215 - 399
Target Start/End: Original strand, 28080804 - 28080988
Alignment:
Q  215 taacgatcgctggtcaaaagattggcaatgtcttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtcttgaa 314  Q
    ||||||| |||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||| ||||| ||||||||||    
T  28080804 taacgattgctgttcaaaaggttggcaatgtcttgaactgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattggcgatgtcttgaa 28080903  T
Q  315 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtcttgaactgttgaacaaatgattagatg 399  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28080904 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattggcgatgtcttgaactgttgaacaaatgattagatg 28080988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 219 - 373
Target Start/End: Original strand, 28080871 - 28081025
Alignment:
Q  219 gatcgctggtcaaaagattggcaatgtcttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtcttgaactgt 318  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||||| ||||||||||||||    
T  28080871 gatcgctggtcaaaagattggcgatgtcttgaactgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattggcgatgtcttgaactgt 28080970  T
Q  319 tgaaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtct 373  Q
    |||| ||||||||||||||||||||||||||| | ||||||||||| | ||||||    
T  28080971 tgaacaaatgattagatgatgataatgatcgcagttcaaaagattggcaatgtct 28081025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 27930058 - 27930000
Alignment:
Q  315 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtct 373  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27930058 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 27930000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 27930466 - 27930408
Alignment:
Q  315 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtct 373  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27930466 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 27930408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 27930670 - 27930612
Alignment:
Q  315 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtct 373  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27930670 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 27930612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 315 - 373
Target Start/End: Original strand, 28081171 - 28081229
Alignment:
Q  315 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtct 373  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28081171 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 28081229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 315 - 373
Target Start/End: Original strand, 28081375 - 28081433
Alignment:
Q  315 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtct 373  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28081375 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 28081433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 315 - 373
Target Start/End: Original strand, 28081579 - 28081637
Alignment:
Q  315 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtct 373  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28081579 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 28081637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 315 - 373
Target Start/End: Original strand, 28081783 - 28081841
Alignment:
Q  315 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtct 373  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28081783 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 28081841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 27930874 - 27930816
Alignment:
Q  315 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtct 373  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  27930874 ctgttgaacaaatgattagatgatgataatgatcgttggtcaaaagattgacaatgtct 27930816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 27931083 - 27931029
Alignment:
Q  310 ttgaactgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattg 364  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  27931083 ttgaactgttgaacaaatgattagatgatgataatgatcgttggtcaaaagattg 27931029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 27931083 - 27931024
Alignment:
Q  247 ttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaat 306  Q
    |||||||||||||||||||||||||||||||||| ||| | || ||||||| ||||||||    
T  27931083 ttgaactgttgaacaaatgattagatgatgataatgatcgttggtcaaaagattggcaat 27931024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 27930058 - 27930000
Alignment:
Q  252 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 310  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||    
T  27930058 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 27930000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 27930262 - 27930204
Alignment:
Q  252 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 310  Q
    |||| |||||||| ||||||||||||||| |||||||| ||||||| ||||||||||||    
T  27930262 ctgtcgaacaaataattagatgatgataatgattgctggtcaaaagattggcaatgtct 27930204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 27930466 - 27930408
Alignment:
Q  252 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 310  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||    
T  27930466 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 27930408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 27930670 - 27930612
Alignment:
Q  252 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 310  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||    
T  27930670 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 27930612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 28081171 - 28081229
Alignment:
Q  252 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 310  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||    
T  28081171 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 28081229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 28081375 - 28081433
Alignment:
Q  252 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 310  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||    
T  28081375 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 28081433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 28081579 - 28081637
Alignment:
Q  252 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 310  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||    
T  28081579 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 28081637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 28081783 - 28081841
Alignment:
Q  252 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 310  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||    
T  28081783 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 28081841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 27930262 - 27930204
Alignment:
Q  315 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattgacgatgtct 373  Q
    |||| ||| |||| ||||||||||||||||||| |||||||||||||||| | ||||||    
T  27930262 ctgtcgaacaaataattagatgatgataatgattgctggtcaaaagattggcaatgtct 27930204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 27930874 - 27930816
Alignment:
Q  252 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 310  Q
    ||||||||||||||||||||||||||||| ||| | || ||||||| ||| ||||||||    
T  27930874 ctgttgaacaaatgattagatgatgataatgatcgttggtcaaaagattgacaatgtct 27930816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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