View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15875_high_33 (Length: 313)
Name: NF15875_high_33
Description: NF15875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15875_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 43964020 - 43964321
Alignment:
| Q |
1 |
ccaccataagaaggtttgatattttcaccagtaacaatgctgacatttccagccaataaaccatgaagttcatatgccatctgaagttagagttaaacat |
100 |
Q |
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| T |
43964020 |
ccaccataagaaggtttgatattttcaccagtaacaatgctgacatttccagccaataaaccatgaagttcatatgccatctgaagttagagttaaacat |
43964119 |
T |
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| Q |
101 |
tattaatatactatttttcttaatnnnnnnnnnngagttgcatttcatatgcaaagataatctagcccaagatactgtgaaatgtatgaaaacaatgtgc |
200 |
Q |
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| T |
43964120 |
tattaatatactatttttcttaataaaaaaaaa-gagttgcatttcatatccaaagataatctagcccaagatactgtgaaatgtatgaaaacaatgtgc |
43964218 |
T |
|
| Q |
201 |
tcacattgtgaaatatgtagcatatacactctggcatgaagcgaagattggacgcttcaccccatattagaagatacaagcccatataaagcaactttct |
300 |
Q |
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| T |
43964219 |
tcacattgtgaaatatgtagcatatacactctggcatgaagcgaagattggacgcttcaccccatatgagaagatacaagcccatataaagcaactttct |
43964318 |
T |
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| Q |
301 |
ctg |
303 |
Q |
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| T |
43964319 |
ctg |
43964321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 39166520 - 39166603
Alignment:
| Q |
1 |
ccaccataagaaggtttgatattttcaccagtaacaatgctgacatttccagccaataaaccatgaagttcatatgccatctga |
84 |
Q |
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| T |
39166520 |
ccaccataagaaggcttgatattttcaccagtgacaatgctgacatttccagccaataaaccatgcagttcatatgccatctga |
39166603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 200 - 305
Target Start/End: Original strand, 39166736 - 39166841
Alignment:
| Q |
200 |
ctcacattgtgaaatatgtagcatatacactctggcatgaagcgaagattggacgcttcaccccatattagaagatacaagcccatataaagcaactttc |
299 |
Q |
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||||||||||||||||| ||||| | ||||||||||||||| |||| ||| |||||||||||||| || ||||||||||| ||||||||||||||||| | |
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| T |
39166736 |
ctcacattgtgaaatatatagcacagacactctggcatgaatcgaacatttgacgcttcaccccaaatgagaagatacaatcccatataaagcaacttcc |
39166835 |
T |
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| Q |
300 |
tctgct |
305 |
Q |
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|||||| |
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| T |
39166836 |
tctgct |
39166841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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