View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15875_high_38 (Length: 300)
Name: NF15875_high_38
Description: NF15875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15875_high_38 |
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| [»] chr1 (8 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 45545059 - 45544760
Alignment:
| Q |
1 |
atatgttgctgacactgaatacccttctgatgttaaaagccatgatcagtttgtgccacacttcactgatgcaacaaaaactcagaatgaatatcctcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45545059 |
atatgttgctgacactgaatacccttctgatgttaaaagccatgatcagtttgtgccacacttcactgatgcaacaaaaactcagaatgaatatcctcag |
45544960 |
T |
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| Q |
101 |
gaaacattgtccacagatatcaatagagaccagaaaaatttggaggaagattctcaagatcaaggaagtagaactgagacttatatccatcccaattatc |
200 |
Q |
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| T |
45544959 |
gaaacattgtccacagatatcaatagagaccagaaaattttggaggaagattctcaagatcaaggaagtagaactgagacttatatccatcccaattatc |
45544860 |
T |
|
| Q |
201 |
aaaccaatgacactgatccaagtattgctggtaagtagattgattcaacaaagtttcagaactctattttttggttttgctataaactctgcattctgta |
300 |
Q |
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| T |
45544859 |
aaaccaaagacactgatccaagtggtgctggtaagtagattgattcaacaaagtttcagaactctattttttggttttgctataaactctgcattctgta |
45544760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 45549847 - 45549631
Alignment:
| Q |
4 |
tgttgctgacactgaatacccttctgatgttaaaagccatgatcagtttgtgccacacttcactgatgcaacaaaaactcagaatgaatatcctcaggaa |
103 |
Q |
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|||| ||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
45549847 |
tgttactgacactgaataccctcctgctgttggaagccatgatcagtttgtgccacacttctctgatgcaacaaaaactcagaatgaatatcctagtgaa |
45549748 |
T |
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| Q |
104 |
acattgtccacagatatcaatagagaccagaaaaatttggaggaagattctcaagatcaaggaagtagaactgagacttatatccatcccaattatcaaa |
203 |
Q |
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| T |
45549747 |
acagtatccaaagat---aatagaaactgggaaattttggaggaatattctcaagatcaaggaagtagaactgaggcatatactcttcccaattatcaaa |
45549651 |
T |
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| Q |
204 |
ccaatgacactgatccaagt |
223 |
Q |
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|||| ||| ||||| ||||| |
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| T |
45549650 |
ccaaagacgctgattcaagt |
45549631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 45544153 - 45544032
Alignment:
| Q |
4 |
tgttgctgacactgaatacccttctgatgttaaaagccatgatcagtttgtgccacacttcactgatgcaacaaaaactcagaatgaatatcctcaggaa |
103 |
Q |
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|||| |||||| |||||||||||||| || | ||||||||||||||||| |||||||||| || |||||||| ||||||||||||||||||||| |||| |
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| T |
45544153 |
tgttactgacattgaatacccttctgctgctggaagccatgatcagtttgcgccacacttcgctaatgcaacagaaactcagaatgaatatcctcgggaa |
45544054 |
T |
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| Q |
104 |
acattgtccacagatatcaata |
125 |
Q |
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||| |||||||||||||||| |
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| T |
45544053 |
acagcatccacagatatcaata |
45544032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 45548884 - 45548795
Alignment:
| Q |
43 |
tgatcagtttgtgccacacttcactgatgcaacaaaaactcagaatgaatatcctcaggaaacattgtccacagatatcaatagagacca |
132 |
Q |
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||||||||||||||||||| || ||||||||||| |||||| ||||||||||||||||| |||| | |||| | | ||||||||| |||| |
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| T |
45548884 |
tgatcagtttgtgccacacctctctgatgcaacagaaactccgaatgaatatcctcaggtaacagtatccaaaaacatcaatagaaacca |
45548795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 45550945 - 45550862
Alignment:
| Q |
140 |
ttggaggaagattctcaagatcaaggaagtagaactgagacttatatccatcccaattatcaaaccaatgacactgatccaagt |
223 |
Q |
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| T |
45550945 |
ttggaggaagattctcaagaacaaggaagtagaaccgaggaatatactcttcccaattatcaaaccaaagaaactgatccaagt |
45550862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 45543425 - 45543359
Alignment:
| Q |
66 |
ctgatgcaacaaaaactcagaatgaatatcctcaggaaacattgtccacagatatcaatagagacca |
132 |
Q |
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| T |
45543425 |
ctgatgcagcagaaactcagagtgaatatcctcaagaaacagtatccacagatatcaatagaaacca |
45543359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 45543962 - 45543896
Alignment:
| Q |
66 |
ctgatgcaacaaaaactcagaatgaatatcctcaggaaacattgtccacagatatcaatagagacca |
132 |
Q |
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| T |
45543962 |
ctgatgcaacagaaattcagaatgaatatcctcaagaaacaacatccgcagatatcaatagaaacca |
45543896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 45545718 - 45545637
Alignment:
| Q |
140 |
ttggaggaagattctcaagatcaaggaagtagaactgagacttatatccatcccaattatcaaaccaatgacactgatccaa |
221 |
Q |
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|||||||||||||||||||| |||||||||||| ||||| | |||| ||||| ||| |||||||| |||||| |||||| |
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| T |
45545718 |
ttggaggaagattctcaagaacaaggaagtagagctgaggcatatacttttcccacttaccaaaccaaagacactaatccaa |
45545637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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