View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15875_high_5 (Length: 404)
Name: NF15875_high_5
Description: NF15875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15875_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 31 - 404
Target Start/End: Complemental strand, 35410092 - 35409719
Alignment:
| Q |
31 |
ccagatgccactcagccacatggcattagactacttactgaagattatccttatgcggctgatggactccccatatggactagtatagagaagttggtca |
130 |
Q |
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| T |
35410092 |
ccagatgccactcggccacatggcattagactacttattgaagattatccttatgcggctgatggactcctcatatggtctagtatagagaagttggtca |
35409993 |
T |
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| Q |
131 |
ggacctgtgtgaaccattactacaaagatttaaatgccgtttcttctgacaatgaactccagtcctggtacaaagaattcatcaacatggggcaccctga |
230 |
Q |
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|||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35409992 |
ggacctatgtgaaccattactacaaagatttgaatgccatttcttctgacaatgaactccagtcctggtacaaagaattcatcaacatggggcaccctga |
35409893 |
T |
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| Q |
231 |
tcataaaaatgctgcctggtggcctaaactaaacacccctgaggatctcatctccttgcttaccaccattatctggactgtatcagcgcaacatgctgtc |
330 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35409892 |
tcataaaaatgctacctggtggcctaaactaaacacccctgaggatctcatctccttgcttaccaccattatctggactgtatcagcgcaacatgctgtc |
35409793 |
T |
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| Q |
331 |
ttgaacttcagtcaatacccctatggtggatatgttccaatccggccacaattaatgcgaaaattaattcctaa |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35409792 |
ttgaacttcagtcaatacccctatggtggatatgttccaatccggccacaattaatgcgaaaattaattcctaa |
35409719 |
T |
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