View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15875_high_6 (Length: 395)
Name: NF15875_high_6
Description: NF15875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15875_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 30 - 373
Target Start/End: Original strand, 2793821 - 2794164
Alignment:
| Q |
30 |
actcaatgccattgatgacggtgtttacgagccaaagacgaaggaaactcgtgctgcttatgaggcgatgttgagtgtaatccagcagcggtttggtggt |
129 |
Q |
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| T |
2793821 |
actcaatgccgttgataacggtgtttacgagccaaagacgaaggaaactcgtgctgcttatgaggcgatgttgagtgtaatccagcagcggtttggtggt |
2793920 |
T |
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| Q |
130 |
cagccgcttgggattatcagaggtgctgctgatgagattctttccattctgaaaaacgactctattggtgacaagaagattaacattgagaaactgctta |
229 |
Q |
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| T |
2793921 |
cagccgcttgggattatcagaggtgctgctgatgagattctttccattctgaaaaacgactctgttggtgacaagaagattaacattgagaaactgctta |
2794020 |
T |
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| Q |
230 |
accctatcactgatactgtgtttaatcaccttgtttcgattggaaaggttataactgattttctggagtttgaggatgttgagggtggttttgattcttt |
329 |
Q |
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| T |
2794021 |
accctatcactgatactgtgtttaatcaccttgtttcgattggaaagcttataactgattttctggagtttgaggatgtggagggtggttttgattcttt |
2794120 |
T |
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| Q |
330 |
tgacggtgttgcagtggaatttgaagagaatgaagatgatgatg |
373 |
Q |
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| T |
2794121 |
tgacggtgttgcagtggaatttgaagagaatgaagatgatgatg |
2794164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 135
Target Start/End: Original strand, 29261256 - 29261349
Alignment:
| Q |
42 |
tgatgacggtgtttacgagccaaagacgaaggaaactcgtgctgcttatgaggcgatgttgagtgtaatccagcagcggtttggtggtcagccg |
135 |
Q |
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| T |
29261256 |
tgatgacggtgtttatcagccgaagacgaaggagacaagagcagcttatgaagctatgttgagtgtgattcagcaacagcttggtggtcagccg |
29261349 |
T |
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