View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15875_high_9 (Length: 389)

Name: NF15875_high_9
Description: NF15875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15875_high_9
NF15875_high_9
[»] chr5 (10 HSPs)
chr5 (26-360)||(13447062-13447396)
chr5 (26-348)||(13419511-13419833)
chr5 (26-293)||(13426402-13426669)
chr5 (28-305)||(13413168-13413445)
chr5 (154-274)||(13388988-13389108)
chr5 (153-274)||(13385167-13385288)
chr5 (154-274)||(13454143-13454263)
chr5 (26-100)||(13454015-13454089)
chr5 (28-107)||(13393562-13393641)
chr5 (192-266)||(13393403-13393477)
[»] chr4 (2 HSPs)
chr4 (46-120)||(47601353-47601427)
chr4 (223-263)||(47601530-47601570)


Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 26 - 360
Target Start/End: Original strand, 13447062 - 13447396
Alignment:
Q  26 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacgagactt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13447062 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagactt 13447161  T
Q  126 accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctact 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13447162 accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcgcaagaacgacatgaatcaaccatgtatcccacccctact 13447261  T
Q  226 ttgtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataaccaaattgag 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13447262 ttgtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataacgaaattgag 13447361  T
Q  326 caattattttctactcgtttcttttgattgactca 360  Q
    |||||||||||||||||||||||||||||||||||    
T  13447362 caattattttctactcgtttcttttgattgactca 13447396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 26 - 348
Target Start/End: Original strand, 13419511 - 13419833
Alignment:
Q  26 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacgagactt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  |||||| ||||| ||||    
T  13419511 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccatatgtgacggtgccatcacgatactt 13419610  T
Q  126 accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctact 225  Q
      ||    ||||    ||| || | | |||||||||||||| |||||| ||||||||||  || ||||||||||||||||||||||||||||| || |||    
T  13419611 tgcaccacatgtgactgtaaatgttgggcagtaattctcaagatcgtcagcacaattttggcatgaacgacatgaatcaaccatgtatcccacaccaact 13419710  T
Q  226 ttgtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataaccaaattgag 325  Q
    |||||||||||||||||||||| |||||||||||| ||||| ||||||| ||||| |||||| |||||  |||||||| || | |||||| ||||||||     
T  13419711 ttgtctccaactttaaacttttctactttgcttccaacctcggttactatacccgcaagttcatgcctgcatttattaaataaattataaacaaattgaa 13419810  T
Q  326 caattattttctactcgtttctt 348  Q
    ||||||||| |||||| ||||||    
T  13419811 caattatttactactcatttctt 13419833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 26 - 293
Target Start/End: Original strand, 13426402 - 13426669
Alignment:
Q  26 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacgagactt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||| ||||   ||||| ||||| ||||    
T  13426402 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcatctgcaaccattgagtcggaataacctccatatgtgacgctgccatcacgatactt 13426501  T
Q  126 accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctact 225  Q
    | ||    ||||    || | || || |||||||||||||| ||| || ||||||||||| || ||||||||||||||||||||||||||||| ||||||    
T  13426502 agcaccacatgtaactgtttgttgggggcagtaattctcaagatcttccgcacaattttcgcatgaacgacatgaatcaaccatgtatcccactcctact 13426601  T
Q  226 ttgtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcct 293  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||| | ||||| |||||| |||||    
T  13426602 ttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgcct 13426669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 28 - 305
Target Start/End: Original strand, 13413168 - 13413445
Alignment:
Q  28 tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacgagacttac 127  Q
    |||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  || ||| ||||| ||||      
T  13413168 tcaagaggtatgttgtcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccataagtgacggttccatcacgatacttgg 13413267  T
Q  128 cattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctacttt 227  Q
    ||    ||||      | |||||| |||||||||||||| || |||   ||||| ||  || || ||||||||||||| || ||| || || ||||||||    
T  13413268 caccacatgtgactacaaatttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaatcaagtagccaacacctacttt 13413367  T
Q  228 gtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattaca 305  Q
    |||||||||||||||||| |  ||||||||||| || |||||||||| ||||| ||| || ||||| |||||||||||    
T  13413368 gtctccaactttaaacttctccactttgcttcctacttctgttactatacccgcaagctcatgcctgtatttattaca 13413445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 154 - 274
Target Start/End: Complemental strand, 13389108 - 13388988
Alignment:
Q  154 cagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactt 253  Q
    |||||||| |||| || |||  ||||||||| ||| || |||||||||||||||||||| || || ||||||||||||||||| || ||||||| |||||    
T  13389108 cagtaattttcaagattgtcaacacaattttgacatgatcgacatgaatcaaccatgtagccaacacctactttgtctccaacattgaacttttctactt 13389009  T
Q  254 tgcttcccacctctgttacta 274  Q
    |||||||||||| ||| ||||    
T  13389008 tgcttcccacctttgtcacta 13388988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 274
Target Start/End: Complemental strand, 13385288 - 13385167
Alignment:
Q  153 gcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttact 252  Q
    ||||||||| |||| || |||  ||||||||| ||| || |||||||||||||  ||||| || || ||||||||||||||||| || ||||||| ||||    
T  13385288 gcagtaattttcaagattgtcaacacaattttgacacgatcgacatgaatcaattatgtagccaacacctactttgtctccaacattgaacttttctact 13385189  T
Q  253 ttgcttcccacctctgttacta 274  Q
    ||||||||||||| ||| ||||    
T  13385188 ttgcttcccacctttgtcacta 13385167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 154 - 274
Target Start/End: Original strand, 13454143 - 13454263
Alignment:
Q  154 cagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactt 253  Q
    ||||||||||||| ||  ||  ||||||||| ||| ||  |||| |||||||||| | ||||||| |||||| ||||||||||||| |||||||| ||||    
T  13454143 cagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactt 13454242  T
Q  254 tgcttcccacctctgttacta 274  Q
    |||||||||| ||||| ||||    
T  13454243 tgcttcccacttctgtaacta 13454263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 13454015 - 13454089
Alignment:
Q  26 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccat 100  Q
    |||||||||||||   ||| |||||||||| ||||||||||||||| | |||||||||||| ||||| |||||||    
T  13454015 catcaagaggtaactgatctggaatgcgaaacacaaagtgctcgtcggaaaccattgagtcagagaagcctccat 13454089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 13393641 - 13393562
Alignment:
Q  28 tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgat 107  Q
    ||||| ||||||| |||||||||| |||  | ||||||||| ||||||||||||||||| ||| | |||||||| |||||    
T  13393641 tcaagtggtaagccatcaggaatgtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgat 13393562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 266
Target Start/End: Complemental strand, 13393477 - 13393403
Alignment:
Q  192 acgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactttgcttcccacctc 266  Q
    |||||| |||||||| | | ||||||| || ||||||||||||| ||| ||||| | |||||||||||| |||||    
T  13393477 acgacacgaatcaactaagcatcccacacccactttgtctccaattttgaacttctctactttgcttcctacctc 13393403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 47601353 - 47601427
Alignment:
Q  46 ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacga 120  Q
    |||||| ||| |||||||||||||||| ||||||||||||| ||| ||||||| || ||| | |||||| |||||    
T  47601353 ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacga 47601427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 47601530 - 47601570
Alignment:
Q  223 actttgtctccaactttaaacttttttactttgcttcccac 263  Q
    ||||||||||||||||| ||||||| |||||||||||||||    
T  47601530 actttgtctccaactttgaacttttctactttgcttcccac 47601570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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