View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15875_low_1 (Length: 276)
Name: NF15875_low_1
Description: NF15875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15875_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 41168457 - 41168713
Alignment:
| Q |
1 |
ttatgttaggattgaaccaaggtatcaagaaattttaagcaaggacatagtagaagctacaaaagatggtatcaaggttagagttattgcaggggaagct |
100 |
Q |
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| T |
41168457 |
ttatgttaggattgaaccaaagtatcaagaaattttaagcaaggacatagtagaagctacaaaagatggtatcaaggttagagttattgcaggggaagct |
41168556 |
T |
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| Q |
101 |
cttggaataaagtcatcaatttacacaaggacaccaacaatgtatttggactttactcttaaacctggatcacacttgcaacaacttgtacctaaatctt |
200 |
Q |
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| T |
41168557 |
cttggaataaagtcaccaatttacacaaggacaccaacaatgtatttggactttactcttaaacctggagcacacttgcaacaacttgtacctaaatctt |
41168656 |
T |
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| Q |
201 |
ggaatgcttttgtgtacatattggaaggagagggtattttcggaaacaaaaattctc |
257 |
Q |
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| T |
41168657 |
ggaatgcttttgtgtacatattggaaggagagggtattttcggaaacaaaaattctc |
41168713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 41170403 - 41170612
Alignment:
| Q |
1 |
ttatgttaggattgaaccaaggtatcaagaaattttaagcaaggacatagtagaagctacaaaagatggtatcaaggttagagttattgcaggggaagct |
100 |
Q |
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||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| || ||||||||| |
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| T |
41170403 |
ttatgttaggattgatccaagataccaagaaattttaagcaaggacatagtagaagctacgaaagatggtttcatggttagagttatggctggggaagct |
41170502 |
T |
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| Q |
101 |
cttggaataaagtcatcaatttacacaaggacaccaacaatgtatttggactttactcttaaacctggatcacacttgcaacaacttgtacctaaatctt |
200 |
Q |
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| T |
41170503 |
cctggaataaagtcaccgatt-----------------aatgtatttggactttactcttaaacatggagcacaattgcaacaacttgtacctaaatctt |
41170585 |
T |
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| Q |
201 |
ggaatgcttttgtgtacatattggaag |
227 |
Q |
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| T |
41170586 |
ggaatgcttttgtttacatcttggaag |
41170612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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