View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15875_low_3 (Length: 206)
Name: NF15875_low_3
Description: NF15875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15875_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 12 - 191
Target Start/End: Original strand, 8541260 - 8541439
Alignment:
| Q |
12 |
gataattctaagttgtttggttaagagtagacggaggaataatgttatcttaagcattgcaattaacgaagaaagggtggaagggatgaatgaaattaaa |
111 |
Q |
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| T |
8541260 |
gataattctaagttgtttggttaagagtagacggaggaataatgttatcttaagcattgcaattaacgaagaaagggtggaaaggatgaatgaaattaaa |
8541359 |
T |
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| Q |
112 |
gttgaggtcttcaaccaatttaacaattattttgagaagaaacatttgcatagtcctgatcatgtgtgagatattctttt |
191 |
Q |
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| T |
8541360 |
gttgaggtcttcaaccaaattaacaattagtttgagaagaaacatttgcatagtcctgatcatgtgtgagatattctttt |
8541439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 151
Target Start/End: Original strand, 24468967 - 24469067
Alignment:
| Q |
51 |
taatgttatcttaagcattgcaattaacgaagaaagggtggaagggatgaatgaaattaaagttgaggtcttcaaccaatttaacaattattttgagaag |
150 |
Q |
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| T |
24468967 |
taatgttatcttaagaattactgtcaacaacgaaagagtggaatgggtaaatgaaattaaagatgaggtcttcaaccattttaacaaacattttgagaag |
24469066 |
T |
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| Q |
151 |
a |
151 |
Q |
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| T |
24469067 |
a |
24469067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 151
Target Start/End: Original strand, 24473915 - 24474015
Alignment:
| Q |
51 |
taatgttatcttaagcattgcaattaacgaagaaagggtggaagggatgaatgaaattaaagttgaggtcttcaaccaatttaacaattattttgagaag |
150 |
Q |
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| T |
24473915 |
taatgttatcttaagaattactgtcaacaacgaaagagtggaatgggtaaatgaaattaaagatgaggtcttcaaccattttaacaaacattttgagaag |
24474014 |
T |
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| Q |
151 |
a |
151 |
Q |
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| T |
24474015 |
a |
24474015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 40226999 - 40227072
Alignment:
| Q |
83 |
aaagggtggaagggatgaatgaaattaaagttgaggtcttcaaccaatttaacaattattttgagaagaaacat |
156 |
Q |
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| T |
40226999 |
aaagtgtggaaggggtgaatgaaattaaaggtgaagtcttcaaccactttaaaaatcattttgaaaagagacat |
40227072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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