View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15876_high_10 (Length: 217)
Name: NF15876_high_10
Description: NF15876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15876_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 5780092 - 5779905
Alignment:
| Q |
16 |
cacttcaaacattggtgttcttctaatgaacaagtacttgttaagcaactatggttacaagttcccggtttttctcaccatgtgtcacatgatgttgtgt |
115 |
Q |
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| T |
5780092 |
cacttcaaacattggtgttcttctaatgaacaagtacttgttaagcagctatggttacaagttcccggttttcctcaccatgtgtcacatgatgttgtgt |
5779993 |
T |
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| Q |
116 |
tcagttttcagttacgttggaatttctgttatggatattgtacctttgcagaatgtgcaatctaagaatcagttgttcaagatctgtg |
203 |
Q |
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| T |
5779992 |
tcagttttcagttacgttggaatttctgttatggatattgtacctttgcagaatgtgcaatctaagaatcagttgttcaagatctgtg |
5779905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 31330248 - 31330332
Alignment:
| Q |
23 |
aacattggtgttcttctaatgaacaagtacttgttaagcaactatggttacaagttcccggtttttctcaccatgtgtcacatga |
107 |
Q |
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|||||||||||||||||| |||||||||| ||||||||||||||||||| ||||| || ||||||||||||||||||| |||| |
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| T |
31330248 |
aacattggtgttcttctattgaacaagtatttgttaagcaactatggtttcaagtatcctatttttctcaccatgtgtcatatga |
31330332 |
T |
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