View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15876_high_7 (Length: 288)
Name: NF15876_high_7
Description: NF15876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15876_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 10244173 - 10244454
Alignment:
| Q |
18 |
atatactctacttaatactctgtcatatcagtaaggtgcatgaaagttcaattttctgt------------gaaaaattaatttatgtttgaatctagaa |
105 |
Q |
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| T |
10244173 |
atatactctacttaatactctgtcatatcagtaaggtgcatgaaagttcaattttctgtagtagacataacgaataattaatttatgtttgaatctagaa |
10244272 |
T |
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| Q |
106 |
tttactaaacttcacgaacttggaatttcattgcattataacttg-----------gctttagtgaaaaatgattttggtgcttaaaattataagagttg |
194 |
Q |
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| T |
10244273 |
tttactaaacttcacgtacttggaatttcattgcattatagcttgactcagtagtagctttagtgaaaaatgattttggtgcttaaaattttaagagttg |
10244372 |
T |
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| Q |
195 |
gagtttggacaaattatacacactcatataatttagttatcttttcaaatttacaattacaattttcaaggttctatatctgtg |
278 |
Q |
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| T |
10244373 |
gagtttggacaaattat--acactcatataatttagttatcttttcaaatttacaattacaattttcaaggttctatatttgtg |
10244454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 10218206 - 10218262
Alignment:
| Q |
81 |
aattaatttatgtttgaatctagaatttactaaacttcacgaacttggaatttcattg |
138 |
Q |
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| T |
10218206 |
aattaattaatgtttgaatctcgaatttactaaa-ttaacgaacttgtaatttcattg |
10218262 |
T |
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