View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15876_low_11 (Length: 283)
Name: NF15876_low_11
Description: NF15876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15876_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 30 - 183
Target Start/End: Complemental strand, 29073654 - 29073501
Alignment:
| Q |
30 |
ctaagacaagctcaggacagaaacaaatacaaatagaacatgaggatggttaaaacttggaagtgaattaagactgtgattgttatgtttcacacatcca |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29073654 |
ctaagacaagctcaggacagaaacaaatacaaatagaacttaagaatggttaaaacttggaagtgaattaagactgtgattgttatgtttcacacatcca |
29073555 |
T |
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| Q |
130 |
agctaaagtgaaacaactcaaactccaaatgtggtaccagctaatgctgatttt |
183 |
Q |
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| T |
29073554 |
agctaaagtgaaacaactcaaactccaaatgtggtagcagctaatgctgatttt |
29073501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 29116709 - 29116656
Alignment:
| Q |
106 |
tgattgttatgtttcacacatccaagctaaagtgaaacaactcaaactccaaat |
159 |
Q |
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|||| ||| ||||||||||||| || ||||||| |||||||||||||| ||||| |
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| T |
29116709 |
tgatagttttgtttcacacatcaaaactaaagtaaaacaactcaaacttcaaat |
29116656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 30 - 183
Target Start/End: Original strand, 11849516 - 11849670
Alignment:
| Q |
30 |
ctaagacaagctcaggacagaaacaaatacaaatagaacatgaggatggttaaaacttggaagt---gaattaagactgtgattgttatgtttcacacat |
126 |
Q |
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|||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||| |
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| T |
11849516 |
ctaagacatgctcaggacagaaacaaaaacaaatagaacttgaggatggttaaaacttggaagtcatgaatcaagactgtgattgtt--gtttcacacat |
11849613 |
T |
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| Q |
127 |
ccaagctaaagtgaaacaactcaaactccaaatgtggtaccagctaatgctgatttt |
183 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11849614 |
ccaagcaaaagtgaaacaactcaaactccaaatgtggtaccagctaattctgatttt |
11849670 |
T |
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