View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15876_low_12 (Length: 271)
Name: NF15876_low_12
Description: NF15876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15876_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 30715977 - 30716138
Alignment:
| Q |
14 |
caaaggggtatttgtgaatggattgagggaagagtttcatgattgggttctcatgcagaaacccacatctttgaacgatgcattgagattggcatttgat |
113 |
Q |
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| T |
30715977 |
caaaggggtatttgtgaatggattgagggaagagtttcatgattgggttctcatgcagaaacccacatctttgaacgatgcattgagattgacatttgat |
30716076 |
T |
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| Q |
114 |
tttgagcatgtgagaaggattagttgaaagaaggaaattgtttctacttgtgggttttgtga |
175 |
Q |
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| T |
30716077 |
tttgagtatgtgagaaggattagtggaaagaaggaaattgtttctacttgtgggttttgtga |
30716138 |
T |
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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 170 - 254
Target Start/End: Original strand, 30716160 - 30716244
Alignment:
| Q |
170 |
ttgtgaagttagggaagagatgagagaactatggagacaaagtgggaagaaagagggaagtgataaggttgctaaagatcttttt |
254 |
Q |
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| T |
30716160 |
ttgtggagttagggaagagacgagagaactatggagacaaagtgggaagaaagagggaagtgataaggttgccaaagatcttttt |
30716244 |
T |
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