View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15876_low_2 (Length: 501)
Name: NF15876_low_2
Description: NF15876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15876_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 258 - 497
Target Start/End: Original strand, 33398417 - 33398658
Alignment:
| Q |
258 |
ttcttgaaggtgtgatttgaaagtcttcaatttcgtcaattgtatcacctttaatttcatcaatccatgcttgctccgaatgcatagaacattcataaac |
357 |
Q |
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| T |
33398417 |
ttcttgaaggtgtgatttgaaagtcttcaatttcgtcaattgtatgacctttaatttcatcaatccatgcttgctccgaatgcatagaacattcataaac |
33398516 |
T |
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| Q |
358 |
aatatcattgcacttgatacagacataaa--atattttctgactttgcaatttggtttatattatctttttcacaaatacattgaaaagaagagaaactt |
455 |
Q |
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| T |
33398517 |
aatatcattgcacttgatatagacataaaatatattttctgactttgcaatttggtttatattatctttttcacaaatacattgaaaagaagagaaactt |
33398616 |
T |
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| Q |
456 |
ttagttatgcattattagtatttaatttttcatcctttgctt |
497 |
Q |
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| T |
33398617 |
ttagttatgcattattagtatttaatttttcattctttgctt |
33398658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 125 - 232
Target Start/End: Original strand, 33398309 - 33398416
Alignment:
| Q |
125 |
gtctccagaaagcatctcatcgcggctttgatatcagcatgaagggtagacatcttcacggatgtgatacttatgagcttaagatttaatcatgtgaatt |
224 |
Q |
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| T |
33398309 |
gtctctagaaagcatcgcatcgcggctttgatatcagcatgaaggatagacatcttcacggatgtgatgcttatgagcttaagatttaatcatgtgaatt |
33398408 |
T |
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| Q |
225 |
cttaatag |
232 |
Q |
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| T |
33398409 |
cttaatag |
33398416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 33398170 - 33398276
Alignment:
| Q |
32 |
caacaccaaacaaaaccctttcgctttgtttacgagtttgaaga------------ggggaggagtaaagagaaaaatagagaattctttggattttgag |
119 |
Q |
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| T |
33398170 |
caacaccaaacaaaaccctttcgctttgtttacgagtttgaagaggggaggtatgtggggaggagtaaagagaaaaatagagaattctttggattttgag |
33398269 |
T |
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| Q |
120 |
aaaacgt |
126 |
Q |
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||||||| |
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| T |
33398270 |
aaaacgt |
33398276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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