View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15876_low_3 (Length: 448)
Name: NF15876_low_3
Description: NF15876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15876_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 7 - 434
Target Start/End: Complemental strand, 10690517 - 10690105
Alignment:
| Q |
7 |
agattattcttgagaccaattctctgcatggaaaaagtagcagcacctccaagttctcatggaatttcttccatggttaaaagaaagacaccatcagaac |
106 |
Q |
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| T |
10690517 |
agattattcttgagaccaattctctgcatggaaaaagtagcagcacctccaagttctcatggaatttcttccatggttaaaagaaagacaccatcagaac |
10690418 |
T |
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| Q |
107 |
ttaggggagagcagttgaagcgggaaaatgttgaagacctcactgatgatgatg---atgaggtttctccctctgctggttccgcgaaagatacacaact |
203 |
Q |
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| T |
10690417 |
ttaggggagagcagttgaagcgggaaagtgttgaagacctcactgatgatgatgatgatgaggtttctccctctgctggttccgcgaaagatacacaact |
10690318 |
T |
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| Q |
204 |
aattggtgaagtattttctgcgaaaaagtccatgtttagaattgtatctaaggagcaaactagtagtaatctaaagaatgatgccaaaggccaggctggt |
303 |
Q |
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| T |
10690317 |
aattggtgaagtattttctgcgaaaaagtccatgtttagaattgtatctaaggagcaaactagtagtaatctaaataa---------------------t |
10690239 |
T |
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| Q |
304 |
gaaaccaatgaaaagttccttagtgttgctgacctttcatcatcagc---tgttggtagatcttctggaggagcagcagcagcaggtatcgacatgggac |
400 |
Q |
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| T |
10690238 |
gaaagcaatgaaaagttccttagtgttgctgacctttcatcatcagctgttgttggtagatcttctggagcagcagcaacatcaggtattgacatgggac |
10690139 |
T |
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| Q |
401 |
aagcattgaaaggactagcctcacttgttgattc |
434 |
Q |
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| T |
10690138 |
aagcattgaaaggactagcctcacttgttaattc |
10690105 |
T |
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