View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15876_low_4 (Length: 400)

Name: NF15876_low_4
Description: NF15876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15876_low_4
NF15876_low_4
[»] scaffold0009 (3 HSPs)
scaffold0009 (11-399)||(39798-40186)
scaffold0009 (11-393)||(33183-33559)
scaffold0009 (94-393)||(21530-21826)
[»] chr5 (1 HSPs)
chr5 (19-123)||(19970209-19970313)


Alignment Details
Target: scaffold0009 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 399
Target Start/End: Complemental strand, 40186 - 39798
Alignment:
Q  11 cacagatcaagggttttaagcgaaggaagatcaaccgaaaagcgagacatagagggtacatttaatctatccaatttgaggaccacaagtgtttcacaca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40186 cacagatcaagggttttaagcgaaggaagatcaaccgaaaagcgagacatagagggtacatttaatctatccaatttgaggaccacaagtgtttcacaca 40087  T
Q  111 cgaaaatggtaggtgacaacatcacttgtaacatgcatagatagagatcctcaacaccgcgttgttttgctgcttcaacccatgtgtcaaaacaaataaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40086 cgaaaatggtaggtgacaacatcacttgtaacatgcatagatagagatcctcaacaccgcgtcgttttgctgcttcaacccatgtgtcaaaacaaataaa 39987  T
Q  211 actattaggtctccagtttttagatcggcagtcaagatgaaatgttttaagagtttgttctcgcgcgtgtgtggagagtagaattgtgtccacgaatcta 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||     
T  39986 actattaggtctccagtttttagatcggcagtcaagatgaaatgttttaagagtttgttcttccgcgtgtgtggagagtagaactgtgtccacgaatctg 39887  T
Q  311 cgaaagtgaacccaagccttttttgtgtaggctttgctatcgctgatgccaataactgcgagcgagtagaacagtaggaaccacctctt 399  Q
    | ||||||||||||||||||||| |||||||||| | ||||||| |||| ||||||||||||||||||||||| || ||||||||||||    
T  39886 caaaagtgaacccaagcctttttcgtgtaggcttcgttatcgcttatgctaataactgcgagcgagtagaacaataagaaccacctctt 39798  T

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Target: scaffold0009; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 11 - 393
Target Start/End: Complemental strand, 33559 - 33183
Alignment:
Q  11 cacagatcaagggttttaagcgaaggaagatcaaccgaaaagcgagacatagagggtacatttaatctatccaatttgaggaccacaagtgtttcacaca 110  Q
    |||||||| || ||||||||| ||||||||||||| ||| | |||||       |||||| ||| ||||||||||||||| |||||||||||||||||||    
T  33559 cacagatcgagcgttttaagcaaaggaagatcaactgaacaacgagat------ggtacaattattctatccaatttgagaaccacaagtgtttcacaca 33466  T
Q  111 cgaaaatggtaggtgacaacatcacttgtaacatgcatagatagagatcctcaacaccgcgttgttttgctgcttcaacccatgtgtcaaaacaaataaa 210  Q
    ||||||||||||| |||||  |||||| || ||||||||||||||||||||| || || ||| |||||||||||| |||||||||||||||||||  |||    
T  33465 cgaaaatggtaggcgacaaggtcacttctaccatgcatagatagagatcctcgaccccacgtcgttttgctgctttaacccatgtgtcaaaacaacgaaa 33366  T
Q  211 actattaggtctccagtttttagatcggcagtcaagatgaaatgttttaagagtttgttctcgcgcgtgtgtggagagtagaattgtgtccacgaatcta 310  Q
    |||||||| |||||| ||||||||| ||||| | ||||||||  ||||||||||||||||| | |||||| |||||| || ||  |||| ||| |||| |    
T  33365 actattagctctccaatttttagattggcagacgagatgaaactttttaagagtttgttcttgtgcgtgtttggagattaaaaccgtgttcacaaatcga 33266  T
Q  311 cgaaagtgaacccaagccttttttgtgtaggctttgctatcgctgatgccaataactgcgagcgagtagaacagtaggaacca 393  Q
    |||||||||||||||||||||||||||||| ||||| |||||| ||| | ||||||||| |||||||| |||| | |||||||    
T  33265 cgaaagtgaacccaagccttttttgtgtagactttgttatcgcagatacgaataactgcaagcgagtaaaacaatgggaacca 33183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 94 - 393
Target Start/End: Complemental strand, 21826 - 21530
Alignment:
Q  94 cacaagtgtttcacacacgaaaatggtaggtgacaacatcacttgtaacatgcatagatagagatcctcaacaccgcgttgttttgctgcttcaacccat 193  Q
    ||||||||||  ||| |||||||||||||| |||||  |||||| ||||| |  ||||||||||||||| || || ||| |||||||| |||| ||||||    
T  21826 cacaagtgttctacaaacgaaaatggtaggcgacaaggtcacttctaacaagtttagatagagatcctcgaccccacgtcgttttgcttcttcgacccat 21727  T
Q  194 gtgtcaaaacaaataaaactattaggtctccagtttttagatcggcagtcaagatgaaatgttttaagagtttgttctcgcgcgtgtgtggagagtagaa 293  Q
    |||||||||||   ||||||||||| |||||| |  |||||| ||||||| ||||||||||||||||||||||||    ||||||||||||||   | ||    
T  21726 gtgtcaaaacagcgaaaactattagctctccaatgattagattggcagtcgagatgaaatgttttaagagtttgtagctgcgcgtgtgtggag---ataa 21630  T
Q  294 ttgtgtccacgaatctacgaaagtgaacccaagccttttttgtgtaggctttgctatcgctgatgccaataactgcgagcgagtagaacagtaggaacca 393  Q
     | ||||||| | ||||||||||| ||||||||||||||| |||||| ||  | ||||||  |||| |||||||||||| ||||| |||||| |||||||    
T  21629 ctttgtccacaattctacgaaagtaaacccaagcctttttcgtgtagactcagttatcgcatatgcgaataactgcgagagagtaaaacagtgggaacca 21530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 19970209 - 19970313
Alignment:
Q  19 aagggttttaagcgaaggaagatcaaccgaaaagcgagacatagagggtacatttaatctatccaatttgaggaccacaagtgtttcacacacgaaaatg 118  Q
    ||||||||| ||||||||||||||||| ||| | ||| ||||||  | ||||| ||  |||  |||||| || |||||||||||||||||   |||||||    
T  19970209 aagggttttgagcgaaggaagatcaacagaagaacgaaacatagttgttacatgtatgctaaacaatttcagaaccacaagtgtttcacagcagaaaatg 19970308  T
Q  119 gtagg 123  Q
    |||||    
T  19970309 gtagg 19970313  T

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