View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15876_low_5 (Length: 398)
Name: NF15876_low_5
Description: NF15876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15876_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 383
Target Start/End: Complemental strand, 5780092 - 5779725
Alignment:
| Q |
16 |
cacttcaaacattggtgttcttctaatgaacaagtacttgttaagcaactatggttacaagttcccggtttttctcaccatgtgtcacatgatgttgtgt |
115 |
Q |
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| T |
5780092 |
cacttcaaacattggtgttcttctaatgaacaagtacttgttaagcagctatggttacaagttcccggttttcctcaccatgtgtcacatgatgttgtgt |
5779993 |
T |
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| Q |
116 |
tcagttttcagttacgttggaatttctgttatggatattgtacctttgcagaatgtgcaatctaagaatcagttgttcaagatctgtggtttgagtgttg |
215 |
Q |
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| T |
5779992 |
tcagttttcagttacgttggaatttctgttatggatattgtacctttgcagaatgtgcaatctaagaatcagttgttcaagatctgtggtttgagtgttg |
5779893 |
T |
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| Q |
216 |
tgttttgtttctccgttgtttgcgggaacatgtcgttgaattatattccggtgtcgtttaatcaagctattggtgctactacaccttttttcaccgctgt |
315 |
Q |
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| T |
5779892 |
tgttttgtttctccgttgtttgcgggaacatgtcgttgaattatattccggtgtcgtttaatcaagctattggtgctactacaccttttttcaccgctgt |
5779793 |
T |
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| Q |
316 |
ttttgcttatgttgtgagtagaaaaagagaggcttgggttacttatgctactcttttgcctgttgttg |
383 |
Q |
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| T |
5779792 |
ttttgcttatgttgtgagtagaaaaagagaggcttgggttacttatgctactcttttgcctgttgttg |
5779725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 31330248 - 31330332
Alignment:
| Q |
23 |
aacattggtgttcttctaatgaacaagtacttgttaagcaactatggttacaagttcccggtttttctcaccatgtgtcacatga |
107 |
Q |
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| T |
31330248 |
aacattggtgttcttctattgaacaagtatttgttaagcaactatggtttcaagtatcctatttttctcaccatgtgtcatatga |
31330332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 24750423 - 24750487
Alignment:
| Q |
261 |
ttccggtgtcgtttaatcaagctattggtgctactacaccttttttcaccgctgtttttgcttat |
325 |
Q |
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| T |
24750423 |
ttcctgtgtcttttaatcaagctattggtgctacgacaccgttttttacggcggtttttgcttat |
24750487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 382
Target Start/End: Original strand, 35016290 - 35016411
Alignment:
| Q |
261 |
ttccggtgtcgtttaatcaagctattggtgctactacaccttttttcaccgctgtttttgcttatgttgtgagtagaaaaagagaggcttgggttactta |
360 |
Q |
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| T |
35016290 |
ttcctgtgtcgtttaatcaagctatcggtgctactacgccgttttttactgcggtttttgcttatgctatgacgctcaaaagagaggcttggcttactta |
35016389 |
T |
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| Q |
361 |
tgctactcttttgcctgttgtt |
382 |
Q |
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| T |
35016390 |
tcttgctcttgttcctgttgtt |
35016411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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