View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15876_low_6 (Length: 397)
Name: NF15876_low_6
Description: NF15876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15876_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 13 - 378
Target Start/End: Complemental strand, 278342 - 277977
Alignment:
| Q |
13 |
aatatataggtttcaatggcatcaagatcaccatcttttgctttcattataagatctggccacatttgtgaagtgctgcgtgggtagtgaattgcaccag |
112 |
Q |
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| T |
278342 |
aatatataggtttcaatggcatcaagatcaccatcttttgctttcattataagatctggccacatttgtgaagtgctgcgtgggtagtgaattgcaccag |
278243 |
T |
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| Q |
113 |
aaattattagttttcgttctccattaataataattgcacttgaatcatattcaacagttgttgctgatgaacaagtgtacaacaatgctaagcatgcaat |
212 |
Q |
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| T |
278242 |
aaattattagttttcgttctccattaagaataattgcacttgaatcatattcaacagttgttgctgatgaacaagtgtacaacaatgctaagcatgcaat |
278143 |
T |
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| Q |
213 |
aagaaatgtcccaaacataggattatacatattttcttaccatgcaataagaaattttcaaatcctaggatttgatatatcaatctatggtcaatgtaca |
312 |
Q |
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| T |
278142 |
aagaaatgtcccaaacatagcattagacatattttcttaccatgcaataagaaattttcaaatcctaggatttgatatatcaatctatggtcaatgtaca |
278043 |
T |
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| Q |
313 |
agtttttctaggcacaatttcatgcttgggttttctatttttagtttattcgtatattatggataa |
378 |
Q |
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| T |
278042 |
agtttttctaggcacaatttcatccttgggttttctatttttagtttattcgtatattatggataa |
277977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 179 - 362
Target Start/End: Complemental strand, 289854 - 289671
Alignment:
| Q |
179 |
atgaacaagtgtacaacaatgctaagcatgcaataagaaatgtcccaaacataggattatacatattttcttaccatgcaataagaaattttcaaatcct |
278 |
Q |
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| T |
289854 |
atgaacaagtacacaacaatgctaaacatgcagtaagaaatatactaaaccttggattagacatatttttcaaacatgcaataagaagtttccaaaccat |
289755 |
T |
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| Q |
279 |
aggatttgatatatcaatctatggtcaatgtaca-agtttttctaggcacaatttcatgcttgggttttctatttttagtttatt |
362 |
Q |
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| T |
289754 |
atgattgaatgtatc-atttaaggtcaatgtacagatttttaataggcacaattttatacatgggttttctatttttagtttatt |
289671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 179 - 362
Target Start/End: Complemental strand, 24531581 - 24531398
Alignment:
| Q |
179 |
atgaacaagtgtacaacaatgctaagcatgcaataagaaatgtcccaaacataggattatacatattttcttaccatgcaataagaaattttcaaatcct |
278 |
Q |
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| T |
24531581 |
atgaacaagtacacaataatgctaaacatgcagtaagaaatgtacgaaacctaggattagacatatttttcaaacatgcaataagaaatttccaaaccat |
24531482 |
T |
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| Q |
279 |
aggatttgatatatcaatctatggtcaatgtacaag-tttttctaggcacaatttcatgcttgggttttctatttttagtttatt |
362 |
Q |
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| T |
24531481 |
atgattgaatgaatc-atctagggtcaatgtacaagttttttataggcacaatttcatacatgggttttctatttttagtttatt |
24531398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 362
Target Start/End: Complemental strand, 24524041 - 24523973
Alignment:
| Q |
295 |
atctatggtcaatgtacaagtttttc-taggcacaatttcatgcttgggttttctatttttagtttatt |
362 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||| | ||| |||||||||||||||||||| |
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| T |
24524041 |
atctagggtcaatgtacaagttttttataggcacaatttcatacatggattttctatttttagtttatt |
24523973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 274
Target Start/End: Complemental strand, 24524908 - 24524813
Alignment:
| Q |
179 |
atgaacaagtgtacaacaatgctaagcatgcaataagaaatgtcccaaacataggattatacatattttcttaccatgcaataagaaattttcaaa |
274 |
Q |
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| T |
24524908 |
atgaacaagtacacaataatgctaaacatgcagtaagaaatgtacgaaacctaggattagacatatttttcaaacatgcaataagaaatttccaaa |
24524813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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