View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15876_low_7 (Length: 369)

Name: NF15876_low_7
Description: NF15876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15876_low_7
NF15876_low_7
[»] chr4 (7 HSPs)
chr4 (1-345)||(40277098-40277441)
chr4 (223-349)||(40361680-40361806)
chr4 (203-351)||(26251385-26251533)
chr4 (268-351)||(16936093-16936176)
chr4 (248-345)||(55863637-55863734)
chr4 (253-290)||(20291125-20291162)
chr4 (299-351)||(19487520-19487572)
[»] chr2 (6 HSPs)
chr2 (203-349)||(42807371-42807518)
chr2 (193-343)||(42882445-42882595)
chr2 (226-347)||(42808593-42808715)
chr2 (240-349)||(3816313-3816421)
chr2 (263-349)||(6402361-6402447)
chr2 (268-349)||(33710863-33710945)
[»] chr8 (6 HSPs)
chr8 (223-349)||(45156372-45156499)
chr8 (223-349)||(45155941-45156068)
chr8 (299-349)||(7130133-7130183)
chr8 (271-349)||(39872185-39872263)
chr8 (203-287)||(9512480-9512565)
chr8 (268-319)||(39870886-39870938)
[»] chr5 (6 HSPs)
chr5 (234-349)||(14410174-14410289)
chr5 (223-333)||(6408566-6408677)
chr5 (268-351)||(14410767-14410851)
chr5 (223-349)||(25868032-25868159)
chr5 (305-349)||(25994553-25994597)
chr5 (305-349)||(32804891-32804935)
[»] chr1 (3 HSPs)
chr1 (203-290)||(11435308-11435396)
chr1 (234-349)||(11434683-11434798)
chr1 (253-290)||(52690271-52690308)
[»] chr7 (3 HSPs)
chr7 (269-349)||(30859819-30859900)
chr7 (226-290)||(36653236-36653300)
chr7 (265-319)||(42627463-42627519)
[»] chr3 (4 HSPs)
chr3 (265-349)||(36754123-36754208)
chr3 (204-280)||(45004493-45004569)
chr3 (268-349)||(16280948-16281029)
chr3 (314-346)||(12784617-12784649)
[»] chr6 (3 HSPs)
chr6 (202-290)||(5741514-5741603)
chr6 (268-349)||(31778799-31778880)
chr6 (253-290)||(12488454-12488491)
[»] scaffold0276 (1 HSPs)
scaffold0276 (223-295)||(3620-3692)
[»] scaffold0251 (1 HSPs)
scaffold0251 (253-291)||(16279-16317)
[»] scaffold0565 (1 HSPs)
scaffold0565 (253-289)||(8466-8502)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 40277441 - 40277098
Alignment:
Q  1 gcatagtaaaagtaaattctcattaccattgtaaatctctccaaactctatccaaacaaaatatatatttttcacttattttatatcttcttttttggca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||    
T  40277441 gcatagtaaaagtaaattctcattaccattgtaaatctctccaaactctatccaagcaaaatatatatttttcacttattttatatcttctttttgagca 40277342  T
Q  101 tcctaattgagctttaaagtgggtgttatttagaaattaaagagagtaattgatttaacaatttcaaccaaaaagtacacacaaaatacctattttctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40277341 tcctaattgagctttaaagtgggtgttatttagaaattaaagagagtaattgatttaacaatttcaaccaaaaagtacacacaaaatacctattttctat 40277242  T
Q  201 tagaattctgctctacccatgtacttttcgcccgcgctctgcaaccatgatgaaaatactcatacgttagttaactaacgtaagtgtaaataaatcgaac 300  Q
    ||||||| |||||| ||| || |||||| || |||||||||||||||||| ||||||||   ||||||| |||||||||| |||| |||| |||||| ||    
T  40277241 tagaattttgctct-cccctgcactttttgctcgcgctctgcaaccatgacgaaaatacctctacgttaattaactaacgcaagtataaaaaaatcggac 40277143  T
Q  301 ttaatttttatacatgcgtaactaaagtcacgccgcgtgagttaa 345  Q
    ||| |||||| |||||  |  || |||||||||||||||||||||    
T  40277142 ttagtttttacacatgaatgccttaagtcacgccgcgtgagttaa 40277098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 349
Target Start/End: Complemental strand, 40361806 - 40361680
Alignment:
Q  223 acttttcgcccgcgctctgcaaccatgatgaaaatactcatacgttagttaactaacgtaagtgtaaataaatcgaacttaatttttatacatgcgtaac 322  Q
    ||||||||| ||||| ||||| ||||||  ||||||  | | || |||||||||| |||| ||||||| |||  | |||||||||||| |||||||| ||    
T  40361806 acttttcgctcgcgccctgcagccatgaccaaaatatccctgcgctagttaactagcgtacgtgtaaaaaaacgggacttaatttttacacatgcgtgac 40361707  T
Q  323 taaagtcacgccgcgtgagttaactca 349  Q
    | |||||||||| ||||||||||||||    
T  40361706 ttaagtcacgccacgtgagttaactca 40361680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 203 - 351
Target Start/End: Original strand, 26251385 - 26251533
Alignment:
Q  203 gaattctgctctacccatgtacttttcgcccgcgctctgcaaccatgatgaaaatactcatacgttagttaactaacgtaagtgtaaat-aaatcgaact 301  Q
    |||||||||||| ||| |  ||||||||| ||||| ||||| ||||||| ||||| ||| | || ||||||||||||| | |||||||| |||    |||    
T  26251385 gaattctgctctcccccttcacttttcgctcgcgccctgcatccatgataaaaatgctcttgcgctagttaactaacgcatgtgtaaatcaaacatgact 26251484  T
Q  302 taatttttatacatgcgtaactaaagtcacgccgcgtgagttaactcatg 351  Q
    ||| ||||| |||||||| ||| |||||||||||  ||||||||||||||    
T  26251485 taa-ttttacacatgcgtgacttaagtcacgccgtatgagttaactcatg 26251533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 351
Target Start/End: Complemental strand, 16936176 - 16936093
Alignment:
Q  268 tagttaactaacgtaagtgtaaataaatcga-acttaatttttatacatgcgtaactaaagtcacgccgcgtgagttaactcatg 351  Q
    ||||||||||||| ||||||||| ||| ||| ||||| |||||| ||||| || ||| |||||||||||| ||||||||||||||    
T  16936176 tagttaactaacgcaagtgtaaaaaaa-cgagacttagtttttagacatgtgtgacttaagtcacgccgcatgagttaactcatg 16936093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 55863734 - 55863637
Alignment:
Q  248 tgatgaaaatactcatacgttagttaactaacgtaagtgtaaataaatcg-aacttaatttttatacatgcgtaactaaagtcacgccgcgtgagttaa 345  Q
    |||| ||||||||||| |||||||||| ||||||| |||||||  || || ||||||| ||||||||||  || ||| |||||||||||| | ||||||    
T  55863734 tgatcaaaatactcatgcgttagttaattaacgtatgtgtaaaacaaacgtaacttaa-ttttatacatatgtgacttaagtcacgccgcataagttaa 55863637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 290
Target Start/End: Complemental strand, 20291162 - 20291125
Alignment:
Q  253 aaaatactcatacgttagttaactaacgtaagtgtaaa 290  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  20291162 aaaatactcatgcgttagttaactaacgcaagtgtaaa 20291125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 19487520 - 19487572
Alignment:
Q  299 acttaatttttatacatgcgtaactaaagtcacgccgcgtgagttaactcatg 351  Q
    ||||| |||||| |||||||| ||| || |||||| |||||||||||||||||    
T  19487520 acttagtttttacacatgcgtgacttaactcacgctgcgtgagttaactcatg 19487572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 203 - 349
Target Start/End: Original strand, 42807371 - 42807518
Alignment:
Q  203 gaattctgctc-tacccatgtacttttcgcccgcgctctgcaaccatgatgaaaatactcatacgttagttaactaacgtaagtgtaaataaatcgaact 301  Q
    ||||||||||| | ||| |||||||||||  ||||| |||||||||| | |||||||||||| |||||||||||||||| ||||||||| |||    |||    
T  42807371 gaattctgctcctccccctgtacttttcgttcgcgccctgcaaccataacgaaaatactcatgcgttagttaactaacgcaagtgtaaa-aaacatgact 42807469  T
Q  302 ta-atttttatacatgcgtaactaaagtcacgccgcgtgagttaactca 349  Q
    ||  |||||| |||| ||| ||| |||||||||||| ||||||||||||    
T  42807470 tagttttttacacatacgtgacttaagtcacgccgcatgagttaactca 42807518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 193 - 343
Target Start/End: Original strand, 42882445 - 42882595
Alignment:
Q  193 ttttctattagaattctgctctac-ccatgtacttttcgcccgcgctctgcaaccatgatgaaaatactcatacgttagttaactaacgtaagtgtaaat 291  Q
    |||||| || |||||||||||| | || || ||||||||| | ||| ||||| ||||||  ||||||| | |||| ||||||||||||| |||||||||     
T  42882445 ttttcttttggaattctgctcttcaccctgcacttttcgctcacgccctgcagccatgactaaaatacccctacgctagttaactaacgcaagtgtaaaa 42882544  T
Q  292 aaatcgaacttaatttttatacatgcgtaactaaagtcacgccgcgtgagtt 343  Q
    |||| | ||||| |||||| |||||||| ||| ||||||||| | |||||||    
T  42882545 aaattg-acttagtttttacacatgcgtgacttaagtcacgctgtgtgagtt 42882595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 347
Target Start/End: Complemental strand, 42808715 - 42808593
Alignment:
Q  226 tttcgcccgcgctctgcaaccatgatgaaaatactcatacgttagttaactaacgtaagtgtaaataaatcgaacttaattt-ttatacatgcgtaacta 324  Q
    |||||| ||| | ||||| ||||||||||||||||| | |||||||||||||||| ||||||||| ||||   ||||| ||| ||| |||||||| |||     
T  42808715 tttcgctcgcaccctgcagccatgatgaaaatactcctgcgttagttaactaacgcaagtgtaaaaaaatgtgacttagtttcttacacatgcgtgactt 42808616  T
Q  325 aagtcacgccgcgtgagttaact 347  Q
    ||||||||| || | ||||||||    
T  42808615 aagtcacgcagcattagttaact 42808593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 240 - 349
Target Start/End: Complemental strand, 3816421 - 3816313
Alignment:
Q  240 tgcaaccatgatgaaaatactcatacgttagttaactaacgtaagtgtaaataaatcgaacttaatttttatacatgcgtaactaaagtcacgccgcgtg 339  Q
    |||| ||||||| |||||| | || ||||| |||||||||| ||||||||| |||| || ||||||||||| | ||| || ||| ||||||||| |||||    
T  3816421 tgcagccatgatcaaaatatttatgcgttaattaactaacgcaagtgtaaaaaaattga-cttaatttttacatatgtgtgacttaagtcacgctgcgtg 3816323  T
Q  340 agttaactca 349  Q
    ||||||||||    
T  3816322 agttaactca 3816313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 349
Target Start/End: Complemental strand, 6402447 - 6402361
Alignment:
Q  263 tacgttagttaactaacgtaagtgtaaataaatcgaacttaatttttatacatgcgtaactaaagtcacgccgcgtgagttaactca 349  Q
    |||| ||||||||||||||||||||||| | |  ||||||| |||||| |||| || |||| ||||||||| || ||||||||||||    
T  6402447 tacgctagttaactaacgtaagtgtaaaaataaggaacttagtttttacacatacgcaacttaagtcacgctgcatgagttaactca 6402361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 349
Target Start/End: Original strand, 33710863 - 33710945
Alignment:
Q  268 tagttaactaacgtaagtgtaaataaatcga-acttaatttttatacatgcgtaactaaagtcacgccgcgtgagttaactca 349  Q
    ||||||||||||| ||||||||| ||  ||  | |||||||||| |||||||| ||| ||||||||| |||||||||||||||    
T  33710863 tagttaactaacgcaagtgtaaaaaatacgtgagttaatttttacacatgcgtgacttaagtcacgctgcgtgagttaactca 33710945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 223 - 349
Target Start/End: Complemental strand, 45156499 - 45156372
Alignment:
Q  223 acttttcgcccgcgctctgcaaccatgatgaaaatactcatacgttagttaactaacgtaagtgtaaataaatc-gaacttaatttttatacatgcgtaa 321  Q
    |||||||| |||||| ||||| ||||||  |||| |||| | |||||||||||||||  ||||||||| ||| | ||| |||||||||| |||||||| |    
T  45156499 acttttcgtccgcgccctgcagccatgaccaaaaaactcctgcgttagttaactaacacaagtgtaaaaaaaacggaatttaatttttacacatgcgtga 45156400  T
Q  322 ctaaagtcacgccgcgtgagttaactca 349  Q
    || ||||||||| || ||||||| ||||    
T  45156399 cttaagtcacgctgcttgagttatctca 45156372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 349
Target Start/End: Original strand, 45155941 - 45156068
Alignment:
Q  223 acttttcgcccgcgctctgcaaccatgatgaaaatactcatacgttagttaactaacgtaagtgtaaataa-atcgaacttaatttttatacatgcgtaa 321  Q
    ||||||||| ||||| || || ||||||  ||||||||| | || || ||||||||| |||||||||| || |  |||||||||||||| |||||||| |    
T  45155941 acttttcgctcgcgccctacagccatgaccaaaatactcttgcgctaattaactaacataagtgtaaaaaataaggaacttaatttttacacatgcgtga 45156040  T
Q  322 ctaaagtcacgccgcgtgagttaactca 349  Q
    || || |||||| || ||||||||||||    
T  45156041 cttaaatcacgctgcatgagttaactca 45156068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 7130133 - 7130183
Alignment:
Q  299 acttaatttttatacatgcgtaactaaagtcacgccgcgtgagttaactca 349  Q
    ||||| ||||||||||||||| ||| ||||||||| |||||||||||||||    
T  7130133 acttagtttttatacatgcgtgacttaagtcacgctgcgtgagttaactca 7130183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 349
Target Start/End: Complemental strand, 39872263 - 39872185
Alignment:
Q  271 ttaactaacgtaagtgtaaataaatcgaacttaatttttatacatgcgtaactaaagtcacgccgcgtgagttaactca 349  Q
    |||||||||| ||||||||| |||  | |||||||||||| ||||| || ||| ||||||||| || ||||||||||||    
T  39872263 ttaactaacgcaagtgtaaaaaaacgggacttaatttttacacatgtgtgacttaagtcacgctgcatgagttaactca 39872185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 287
Target Start/End: Complemental strand, 9512565 - 9512480
Alignment:
Q  203 gaattctgctctac-ccatgtacttttcgcccgcgctctgcaaccatgatgaaaatactcatacgttagttaactaacgtaagtgt 287  Q
    |||||||||||| | || || |||||| || |||||||||||||| || ||||||||| ||| |||||||||| ||||| ||||||    
T  9512565 gaattctgctcttcaccctgcactttttgctcgcgctctgcaaccttgctgaaaatacccatgcgttagttaagtaacgcaagtgt 9512480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 319
Target Start/End: Original strand, 39870886 - 39870938
Alignment:
Q  268 tagttaactaacgtaagtgtaaataaatc-gaacttaatttttatacatgcgt 319  Q
    ||||||||||||| ||||||||| ||| | |||||||||||||| ||||||||    
T  39870886 tagttaactaacgcaagtgtaaaaaaaacggaacttaatttttacacatgcgt 39870938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 234 - 349
Target Start/End: Original strand, 14410174 - 14410289
Alignment:
Q  234 gcgctctgcaaccatgatgaaaatactcatacgttagttaactaacgtaagtgtaaataaatcgaacttaatttttatacatgcgtaactaaagtcacgc 333  Q
    |||||||||| |||||   ||||||||| | || |||||| | |||| ||||||||| ||||   ||||| ||||||||||||||| ||| |||||||||    
T  14410174 gcgctctgcagccatgcctaaaatactcctgcgctagttagccaacgcaagtgtaaaaaaatgtgacttagtttttatacatgcgtgacttaagtcacgc 14410273  T
Q  334 cgcgtgagttaactca 349  Q
     |||||||||||||||    
T  14410274 tgcgtgagttaactca 14410289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 333
Target Start/End: Original strand, 6408566 - 6408677
Alignment:
Q  223 acttttcgcccgcgctctgcaaccatgatgaaaatactcatacgttagttaactaacgtaagtgtaaataaatcgaacttaa-tttttatacatgcgtaa 321  Q
    ||||||||| | ||||||||| |||||  |||||||| | | |||||||||||||||||||| ||||| |||    |||||| |||||| |||||||| |    
T  6408566 acttttcgctcacgctctgcagccatggcgaaaatacccctgcgttagttaactaacgtaagcgtaaaaaaacgtgacttaattttttacacatgcgtga 6408665  T
Q  322 ctaaagtcacgc 333  Q
    || |||||||||    
T  6408666 cttaagtcacgc 6408677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 351
Target Start/End: Complemental strand, 14410851 - 14410767
Alignment:
Q  268 tagttaactaacgtaagtgtaaataaatcga-acttaatttttatacatgcgtaactaaagtcacgccgcgtgagttaactcatg 351  Q
    |||||||||||||  |||||||| || |||  ||||| |||||| ||||| || ||| ||||||||| |||||||||||||||||    
T  14410851 tagttaactaacgcgagtgtaaaaaattcgtgacttagtttttacacatgtgtgacttaagtcacgctgcgtgagttaactcatg 14410767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 349
Target Start/End: Original strand, 25868032 - 25868159
Alignment:
Q  223 acttttcgcccgcgctctgcaaccatgatgaaaatactcatacgttagttaactaacgtaagtgtaaataa-atcgaacttaatttttatacatgcgtaa 321  Q
    ||||||||| ||||| ||||| |||| |  ||||||  | |||| ||||||||||||| ||||||||| || |  | ||||| |||||| ||||| || |    
T  25868032 acttttcgctcgcgccctgcagccatcaccaaaataaccctacgctagttaactaacgcaagtgtaaaaaataagggacttagtttttacacatgtgtga 25868131  T
Q  322 ctaaagtcacgccgcgtgagttaactca 349  Q
    || ||||||||| || ||||||||||||    
T  25868132 cttaagtcacgctgcatgagttaactca 25868159  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 25994553 - 25994597
Alignment:
Q  305 tttttatacatgcgtaactaaagtcacgccgcgtgagttaactca 349  Q
    |||||| |||||||| ||| |||||||||||| ||||||||||||    
T  25994553 tttttacacatgcgtgacttaagtcacgccgcctgagttaactca 25994597  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 32804935 - 32804891
Alignment:
Q  305 tttttatacatgcgtaactaaagtcacgccgcgtgagttaactca 349  Q
    |||||| ||||| || ||| |||||||||||||||||||||||||    
T  32804935 tttttacacatgtgtgacttaagtcacgccgcgtgagttaactca 32804891  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 11435396 - 11435308
Alignment:
Q  203 gaattctgctctac-ccatgtacttttcgcccgcgctctgcaaccatgatgaaaatactcatacgttagttaactaacgtaagtgtaaa 290  Q
    |||||||||||| | || || ||||||| | ||||| ||||||||||||  |||||||||||||| ||||||||||||| |||||||||    
T  11435396 gaattctgctcttcaccctgcacttttcactcgcgccctgcaaccatgaccaaaatactcatacgctagttaactaacgcaagtgtaaa 11435308  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 349
Target Start/End: Original strand, 11434683 - 11434798
Alignment:
Q  234 gcgctctgcaaccatgatgaaaatactcatacgttagttaactaacgtaagtgtaaataaatcgaacttaatttttatacatgcgtaactaaagtcacgc 333  Q
    |||| ||||| ||||||  ||||||||| | || ||||||||||||| ||||||||| |||    ||||| |||||| |||||| | ||| ||||||| |    
T  11434683 gcgccctgcagccatgaccaaaatactcctgcgctagttaactaacgcaagtgtaaaaaaaattgacttagtttttacacatgcctgacttaagtcacac 11434782  T
Q  334 cgcgtgagttaactca 349  Q
     |||||||||||||||    
T  11434783 tgcgtgagttaactca 11434798  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 290
Target Start/End: Complemental strand, 52690308 - 52690271
Alignment:
Q  253 aaaatactcatacgttagttaactaacgtaagtgtaaa 290  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  52690308 aaaatactcatgcgttagttaactaacgcaagtgtaaa 52690271  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 349
Target Start/End: Original strand, 30859819 - 30859900
Alignment:
Q  269 agttaactaacgtaagtgtaaataaatcga-acttaatttttatacatgcgtaactaaagtcacgccgcgtgagttaactca 349  Q
    |||||||||||| ||||||||| ||| ||  ||||| |||||| |||||| | ||| |||||||||||||||||||||||||    
T  30859819 agttaactaacgcaagtgtaaaaaaaacgggacttagtttttacacatgcatgacttaagtcacgccgcgtgagttaactca 30859900  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 36653236 - 36653300
Alignment:
Q  226 tttcgcccgcgctctgcaaccatgatgaaaatactcatacgttagttaactaacgtaagtgtaaa 290  Q
    |||||| |||||||| || ||||  ||||||||| | | |||||||||||||||| |||||||||    
T  36653236 tttcgctcgcgctctacagccattttgaaaatacgcctgcgttagttaactaacgcaagtgtaaa 36653300  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 319
Target Start/End: Original strand, 42627463 - 42627519
Alignment:
Q  265 cgttagttaactaacgtaagtgtaaata-aatc-gaacttaatttttatacatgcgt 319  Q
    |||||||||||||||||||||||||| | ||||  |||||| |||||||||||||||    
T  42627463 cgttagttaactaacgtaagtgtaaaaataatctaaacttagtttttatacatgcgt 42627519  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 36754208 - 36754123
Alignment:
Q  265 cgttagttaactaacgtaagtgtaa--ataaatcgaacttaatttttatacatgcgtaactaaagtcacgccgcgtgagttaactca 349  Q
    |||||||||||||||| ||||||||  | |||| || |||| ||||||||||| ||||||| ||||||||  |||||||||||||||    
T  36754208 cgttagttaactaacgcaagtgtaagaaaaaattga-cttagtttttatacatacgtaacttaagtcacgttgcgtgagttaactca 36754123  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 45004569 - 45004493
Alignment:
Q  204 aattctgctctacccatgtacttttcgcccgcgctctgcaaccatgatgaaaatactcatacgttagttaactaacg 280  Q
    ||||||||||| | | || ||||||||| ||||||||||| || || | ||||||| | ||||||||||||||||||    
T  45004569 aattctgctcttctcctgcacttttcgctcgcgctctgcagccttgctcaaaatacccctacgttagttaactaacg 45004493  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 349
Target Start/End: Complemental strand, 16281029 - 16280948
Alignment:
Q  268 tagttaactaacgtaagtgtaaataaatcgaacttaatttttatacatgcgtaactaaagtcacgccgcgtgagttaactca 349  Q
    ||||||||||||  | ||||||| |||  | | ||| |||||| || ||||| ||| |||||||||||||||||||||||||    
T  16281029 tagttaactaacccaggtgtaaaaaaacgggatttagtttttacacttgcgtgacttaagtcacgccgcgtgagttaactca 16280948  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 346
Target Start/End: Complemental strand, 12784649 - 12784617
Alignment:
Q  314 atgcgtaactaaagtcacgccgcgtgagttaac 346  Q
    |||||||||| ||||||||||||||||||||||    
T  12784649 atgcgtaacttaagtcacgccgcgtgagttaac 12784617  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 290
Target Start/End: Complemental strand, 5741603 - 5741514
Alignment:
Q  202 agaattctgctctac-ccatgtacttttcgcccgcgctctgcaaccatgatgaaaatactcatacgttagttaactaacgtaagtgtaaa 290  Q
    ||||||||||||| | || || ||||||||| ||||| ||||| ||||||  ||||||| | | |||||||||||||||| |||||||||    
T  5741603 agaattctgctcttcaccctgcacttttcgctcgcgccctgcagccatgaccaaaatacacctgcgttagttaactaacgcaagtgtaaa 5741514  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 349
Target Start/End: Original strand, 31778799 - 31778880
Alignment:
Q  268 tagttaactaacgtaagtgtaaataaatcga-acttaatttttatacatgcgtaactaaagtcacgccgcgtgagttaactca 349  Q
    ||||||||||||| | |||||||| || ||  |||||||||| | |||||||| ||| |||||||||||| ||||||||||||    
T  31778799 tagttaactaacgcatgtgtaaatcaaacgtgacttaatttt-acacatgcgtgacttaagtcacgccgcatgagttaactca 31778880  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 12488454 - 12488491
Alignment:
Q  253 aaaatactcatacgttagttaactaacgtaagtgtaaa 290  Q
    |||||||||||  |||||||||||||||||||||||||    
T  12488454 aaaatactcatgtgttagttaactaacgtaagtgtaaa 12488491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 295
Target Start/End: Complemental strand, 3692 - 3620
Alignment:
Q  223 acttttcgcccgcgctctgcaaccatgatgaaaatactcatacgttagttaactaacgtaagtgtaaataaat 295  Q
    ||||||||| ||||| ||||| ||||||  ||||||||| | ||||||||||| |||| ||||||||| ||||    
T  3692 acttttcgctcgcgccctgcagccatgactaaaatactcctgcgttagttaaccaacgcaagtgtaaaaaaat 3620  T

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Target: scaffold0251 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 291
Target Start/End: Original strand, 16279 - 16317
Alignment:
Q  253 aaaatactcatacgttagttaactaacgtaagtgtaaat 291  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  16279 aaaatacccatgcgttagttaactaacgtaagtgtaaat 16317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 8466 - 8502
Alignment:
Q  253 aaaatactcatacgttagttaactaacgtaagtgtaa 289  Q
    |||||||||||||||||||||||||| | ||||||||    
T  8466 aaaatactcatacgttagttaactaatgcaagtgtaa 8502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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